Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 6.2e-126 454.1 228 100.0
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 3.6e-102 375.2 195 96.4
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 4.8e-102 374.8 195 96.4
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.8e-101 372.9 195 94.4
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 6.9e-101 370.9 195 94.9
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 1.2e-100 370.2 195 93.3
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.2e-100 370.2 195 94.9
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.2e-100 370.2 195 94.9
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.2e-100 370.2 195 94.4
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.2e-100 370.2 195 94.9
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 2.0e-100 369.4 195 93.8
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 2.6e-100 369.0 195 93.8
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.4e-100 368.6 195 93.8
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 3.4e-100 368.6 195 93.8
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 3.4e-100 368.6 195 94.4
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 4.5e-100 368.2 195 93.8
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 4.5e-100 368.2 195 93.8
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 4.5e-100 368.2 195 93.8
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 5.8e-100 367.9 195 93.8
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 5.8e-100 367.9 195 94.4
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 7.6e-100 367.5 195 93.8
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 7.6e-100 367.5 195 93.8
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 9.9e-100 367.1 195 93.8
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 9.9e-100 367.1 195 93.3
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 9.9e-100 367.1 195 93.3
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.3e-99 366.7 195 93.8
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.7e-99 366.3 195 93.3
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 1.7e-99 366.3 195 92.3
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 2.2e-99 365.9 195 93.3
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 2.2e-99 365.9 195 91.8
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 2.2e-99 365.9 195 92.8
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 2.9e-99 365.5 195 93.3
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 2.9e-99 365.5 195 92.8
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 2.9e-99 365.5 195 92.8
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 3.8e-99 365.2 195 92.8
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 3.8e-99 365.2 195 92.8
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 4.9e-99 364.8 195 92.3
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 4.9e-99 364.8 193 92.7
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 4.9e-99 364.8 195 92.8
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 4.9e-99 364.8 195 91.8
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 6.4e-99 364.4 193 93.3
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 6.4e-99 364.4 193 93.3
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 6.4e-99 364.4 195 93.8
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 6.4e-99 364.4 193 93.3
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 8.4e-99 364.0 195 92.8
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 8.4e-99 364.0 195 92.3
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.4e-98 363.2 193 92.7
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.4e-98 363.2 193 92.7
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.4e-98 363.2 193 92.7
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.4e-98 363.2 195 92.8
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 1.9e-98 362.8 193 92.7
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 1.9e-98 362.8 195 91.8
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 1.9e-98 362.8 195 92.3
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.2e-98 362.1 195 91.8
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 3.2e-98 362.1 195 92.3
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 4.2e-98 361.7 195 91.3
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 4.2e-98 361.7 195 91.8
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 5.4e-98 361.3 193 92.7
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 5.4e-98 361.3 195 91.8
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 9.3e-98 360.5 193 91.7
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 9.3e-98 360.5 195 91.8
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 9.3e-98 360.5 195 92.8
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 9.3e-98 360.5 195 92.8
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.2e-97 360.1 195 91.3
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.6e-97 359.8 195 91.3
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.6e-97 359.8 195 91.3
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 1.6e-97 359.8 193 93.3
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 2.1e-97 359.4 196 90.8
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 2.7e-97 359.0 195 91.3
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.7e-97 359.0 195 91.3
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 3.5e-97 358.6 201 90.0
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 4.6e-97 358.2 195 90.3
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 6.0e-97 357.8 195 91.3
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 7.9e-97 357.5 195 91.3
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 1.0e-96 357.1 195 90.8
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 1.3e-96 356.7 186 94.6
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.3e-96 356.7 195 89.7
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.0e-96 355.5 189 92.6
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.0e-96 355.5 195 90.3
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 3.0e-96 355.5 199 89.9
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 6.7e-96 354.4 190 91.6
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 6.7e-96 354.4 187 93.6
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.7e-96 354.4 195 89.7
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 8.7e-96 354.0 186 93.5
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.1e-95 353.6 189 92.6
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 1.5e-95 353.2 186 93.5
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.9e-95 352.8 187 93.0
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 2.5e-95 352.4 185 93.5
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 2.5e-95 352.4 185 93.5
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 2.5e-95 352.4 186 92.5
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 4.3e-95 351.7 189 92.1
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 4.3e-95 351.7 185 93.5
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 4.3e-95 351.7 195 88.7
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 7.4e-95 350.9 186 93.0
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 7.4e-95 350.9 186 91.9
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 9.6e-95 350.5 185 93.5
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 9.6e-95 350.5 188 92.0
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 1.3e-94 350.1 185 93.0
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.6e-94 349.7 185 92.4
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 2.1e-94 349.4 185 93.0
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 2.1e-94 349.4 185 93.0
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.8e-94 349.0 185 93.0
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 2.8e-94 349.0 195 88.2
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 5.3e-93 344.7 195 87.7
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 4.5e-92 341.7 195 88.7
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 7.6e-92 340.9 195 89.2
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.0e-91 340.5 218 80.3
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.7e-91 339.7 195 87.2
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 6.4e-91 337.8 195 88.7
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 3.2e-90 335.5 216 80.1
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 6.0e-89 331.3 226 76.1
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 1.5e-87 326.6 194 80.4
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.9e-87 326.2 176 92.0
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.3e-86 323.6 195 80.5
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 2.4e-85 319.3 195 84.1
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.1e-80 301.6 195 81.0
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 8.7e-80 300.8 195 80.0
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 8.7e-80 300.8 194 80.4
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 3.3e-79 298.9 195 80.0
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 2.4e-77 292.7 166 87.3
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 2.4e-77 292.7 195 77.9
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.9e-76 288.1 186 80.6
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.9e-76 288.1 186 80.6
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 3.8e-75 285.4 186 80.1
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 5.5e-74 281.6 150 94.0
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 3.9e-72 275.4 195 73.3
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 1.1e-66 257.3 134 93.3
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 2.6e-63 246.1 181 66.9
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 4.8e-62 241.9 142 83.1
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 5.0e-59 231.9 124 91.9
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.9e-58 229.9 180 67.8
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.2e-54 216.5 128 87.5
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.3e-54 214.9 123 87.8
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 1.4e-53 213.8 148 75.7
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 2.2e-46 189.9 186 59.1
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 2.8e-46 189.5 188 50.5
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 2.2e-43 179.9 173 53.2
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 5.0e-43 178.7 93 95.7
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 5.7e-39 165.2 123 73.2
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.3e-38 164.1 83 96.4
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.3e-35 153.3 106 75.5
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.6e-35 151.8 106 74.5
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.7e-33 145.6 79 92.4
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.9e-26 123.6 70 85.7
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.5e-26 121.3 70 82.9
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 2.9e-22 109.8 58 89.7
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 2.7e-20 103.2 109 57.8
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 1.0e-19 101.3 54 90.7
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 3.6e-17 92.8 109 50.5
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.3e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.7e-14 84.0 42 95.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 4.9e-14 82.4 52 73.1
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.4e-14 82.0 47 78.7
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 1.4e-13 80.9 90 52.2
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.5e-12 76.3 50 74.0
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 6.0e-12 75.5 40 92.5
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-11 74.3 43 86.0
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-11 74.3 43 86.0
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 2.3e-11 73.6 39 92.3
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 9.9e-07 58.2 39 74.4


User provided reference genes

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