Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 3.8e-84 314.7 147 100.0
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 4.4e-24 115.2 76 72.4
Oeu001917.1 Olea europaea HOM05D001574 ORTHO05D000708 1.8e-22 109.8 73 76.7
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.9e-21 104.8 76 61.8
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.7e-20 103.2 76 61.8
Oeu036234.1 Olea europaea HOM05D012831 ORTHO05D001038 6.6e-20 101.3 116 51.7
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.5e-19 100.1 76 59.2
Oeu001031.1 Olea europaea HOM05D012831 ORTHO05D001038 1.5e-19 100.1 53 88.7
Oeu049704.1 Olea europaea HOM05D002234 ORTHO05D002254 1.5e-19 100.1 110 53.6
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.9e-19 99.8 76 63.2
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.5e-19 99.4 76 61.8
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.5e-19 99.4 76 59.2
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.5e-19 98.2 76 61.8
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 2.1e-18 96.3 76 57.9
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 3.6e-18 95.5 76 57.9
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 8.0e-18 94.4 76 59.2
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.0e-17 94.0 84 51.2
Oeu036472.1 Olea europaea HOM05D012831 ORTHO05D001038 3.0e-17 92.4 54 85.2
Oeu039104.1 Olea europaea HOM05D000347 ORTHO05D000694 4.0e-17 92.0 54 83.3
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 5.2e-17 91.7 54 81.5
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 8.9e-17 90.9 76 57.9
Oeu010630.1 Olea europaea HOM05D012831 ORTHO05D010042 1.2e-16 90.5 50 86.0
Oeu015118.1 Olea europaea HOM05D012831 ORTHO05D010042 2.0e-16 89.7 51 84.3
Oeu046680.1 Olea europaea HOM05D012831 ORTHO05D010042 2.6e-16 89.4 63 74.6
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 4.4e-16 88.6 76 52.6
Oeu040064.1 Olea europaea HOM05D000327 ORTHO05D000218 4.4e-16 88.6 55 78.2
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 5.7e-16 88.2 76 52.6
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 5.7e-16 88.2 52 80.8
Oeu059007.1 Olea europaea HOM05D012831 ORTHO05D001038 5.7e-16 88.2 54 77.8
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 5.7e-16 88.2 79 54.4
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 7.5e-16 87.8 78 52.6
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 7.5e-16 87.8 76 53.9
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 9.8e-16 87.4 76 52.6
Oeu008354.1 Olea europaea HOM05D000036 ORTHO05D001038 9.8e-16 87.4 54 77.8
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.3e-15 87.0 76 55.3
Oeu046622.1 Olea europaea HOM05D000039 ORTHO05D005440 1.3e-15 87.0 54 77.8
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.7e-15 86.7 76 51.3
Oeu037869.1 Olea europaea HOM05D008641 ORTHO05D000397 1.7e-15 86.7 54 77.8
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 2.2e-15 86.3 79 54.4
Oeu027491.1 Olea europaea HOM05D012831 ORTHO05D001038 2.2e-15 86.3 54 75.9
Oeu046960.1 Olea europaea HOM05D012831 ORTHO05D001038 2.2e-15 86.3 54 75.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 2.2e-15 86.3 76 53.9
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 2.8e-15 85.9 76 56.6
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 2.8e-15 85.9 76 52.6
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.7e-15 85.5 76 55.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.7e-15 85.5 76 52.6
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.9e-15 85.1 81 51.9
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 6.3e-15 84.7 76 53.9
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 8.3e-15 84.3 76 53.9
Oeu051817.1 Olea europaea HOM05D012831 ORTHO05D001038 8.3e-15 84.3 54 75.9
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.1e-14 84.0 76 52.6
Oeu021234.1 Olea europaea HOM05D012831 ORTHO05D001038 1.1e-14 84.0 54 77.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.4e-14 83.6 76 53.9
Oeu046599.1 Olea europaea HOM05D000001 ORTHO05D001247 1.4e-14 83.6 54 74.1
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 1.8e-14 83.2 76 53.9
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 1.8e-14 83.2 76 53.9
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 2.4e-14 82.8 76 52.6
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.1e-14 82.4 76 48.7
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.1e-14 82.4 76 48.7
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.1e-14 82.4 81 50.6
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 3.1e-14 82.4 76 52.6
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 4.1e-14 82.0 76 51.3
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.1e-14 82.0 76 48.7
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 5.4e-14 81.6 76 48.7
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 7.0e-14 81.3 76 50.0
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 9.2e-14 80.9 76 48.7
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 9.2e-14 80.9 76 48.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 9.2e-14 80.9 79 50.6
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 9.2e-14 80.9 76 48.7
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.2e-13 80.5 76 52.6
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.2e-13 80.5 76 51.3
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.2e-13 80.5 76 47.4
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.6e-13 80.1 76 50.0
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 2.0e-13 79.7 76 51.3
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 2.0e-13 79.7 76 47.4
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.0e-13 79.7 76 48.7
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 2.7e-13 79.3 74 47.3
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.5e-13 79.0 81 48.1
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 3.5e-13 79.0 77 50.6
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 4.5e-13 78.6 76 48.7
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 5.9e-13 78.2 76 51.3
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 5.9e-13 78.2 77 53.2
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 5.9e-13 78.2 77 53.2
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.9e-13 78.2 76 52.6
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.9e-13 78.2 76 52.6
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.0e-12 77.4 76 50.0
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.0e-12 77.4 77 53.2
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.0e-12 77.4 76 48.7
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.0e-12 77.4 76 52.6
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 1.7e-12 76.6 106 41.5
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 2.3e-12 76.3 76 47.4
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.3e-12 76.3 79 45.6
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 2.3e-12 76.3 76 47.4
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 5.0e-12 75.1 77 51.9
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 5.0e-12 75.1 77 51.9
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.0e-12 75.1 81 44.4
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 5.0e-12 75.1 81 40.7
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 5.0e-12 75.1 81 44.4
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 5.0e-12 75.1 74 47.3
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 6.6e-12 74.7 76 44.7
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 6.6e-12 74.7 77 45.5
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 6.6e-12 74.7 78 46.2
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 8.6e-12 74.3 76 44.7
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 8.6e-12 74.3 76 44.7
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.1e-11 73.9 76 44.7
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.1e-11 73.9 76 48.7
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.5e-11 73.6 76 46.1
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.5e-11 73.6 76 44.7
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.9e-11 73.2 76 43.4
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.9e-11 73.2 76 43.4
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.9e-11 73.2 76 43.4
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 3.3e-11 72.4 100 40.0
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 3.3e-11 72.4 71 50.7
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.3e-11 72.4 75 40.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 4.3e-11 72.0 100 40.0
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 4.3e-11 72.0 81 39.5
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 9.5e-11 70.9 76 42.1
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 9.5e-11 70.9 76 47.4
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 9.5e-11 70.9 75 42.7
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.2e-10 70.5 79 44.3
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 2.1e-10 69.7 81 49.4
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 2.1e-10 69.7 78 43.6
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.1e-10 69.7 76 42.1
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 2.1e-10 69.7 76 43.4
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 2.8e-10 69.3 81 48.1
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.8e-10 69.3 81 48.1
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.8e-10 69.3 76 43.4
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.6e-10 68.9 76 46.1
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 8.0e-10 67.8 77 41.6
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.4e-09 67.0 78 46.2
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.8e-09 66.6 76 43.4
Oeu016426.1 Olea europaea HOM05D000011 ORTHO05D000018 2.3e-09 66.2 102 41.2
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.1e-09 65.9 81 37.0
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.1e-09 65.9 91 37.4
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 6.8e-09 64.7 76 40.8
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 7.5e-08 61.2 78 39.7
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 9.8e-08 60.8 78 38.5
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 9.8e-08 60.8 84 42.9
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 9.8e-08 60.8 83 44.6
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.3e-07 60.5 78 37.2
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 2.2e-07 59.7 71 43.7
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.9e-07 59.3 76 39.5
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 4.9e-07 58.5 76 39.5
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 4.9e-07 58.5 76 39.5
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.4e-07 58.2 80 41.2
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 8.3e-07 57.8 57 42.1
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.9e-06 56.6 58 44.8
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 3.2e-06 55.8 61 42.6
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 7.0e-06 54.7 75 34.7


User provided reference genes

Program Settings