Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1316.6 684 100.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1186.8 695 88.5
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1186.4 695 88.5
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1186.0 695 88.2
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1184.9 696 88.5
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1179.9 694 88.0
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1176.8 695 87.3
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1176.8 695 87.3
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1176.4 696 87.8
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1174.8 695 86.5
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1174.5 695 87.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1174.1 696 87.4
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1171.4 696 87.4
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1168.7 695 86.8
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1167.9 695 87.3
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1166.4 695 86.3
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1159.1 695 85.5
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1155.6 695 85.3
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1155.2 695 85.9
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1153.7 696 85.1
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1151.0 695 85.0
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1151.0 695 85.3
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1150.6 695 85.5
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1150.6 695 85.8
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1147.9 695 84.5
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1147.1 695 85.3
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1140.9 696 84.8
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1140.2 695 84.3
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1140.2 698 85.1
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1139.8 694 84.6
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1139.0 695 84.0
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1138.6 696 84.9
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1137.9 697 84.5
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1133.2 695 84.2
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1133.2 697 84.1
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1132.1 695 84.3
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1131.3 694 84.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1130.9 695 84.2
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1130.2 695 84.3
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1128.6 695 83.3
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1127.1 695 83.5
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1127.1 695 82.7
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1126.7 668 85.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1126.3 694 83.9
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1124.0 696 82.6
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1122.1 695 83.2
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1122.1 694 83.1
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1122.1 695 82.9
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1121.7 697 82.9
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1119.0 694 82.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1118.2 697 81.5
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1115.9 694 82.6
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1115.5 694 82.6
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1115.1 695 82.4
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1115.1 695 82.4
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1114.8 695 82.0
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1114.8 695 82.4
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1114.0 695 82.3
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1114.0 697 81.1
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1114.0 696 82.0
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1113.2 695 82.4
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1112.1 695 82.3
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1111.3 740 79.9
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1110.5 696 81.9
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1110.1 695 81.9
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1110.1 696 81.8
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1108.2 696 81.8
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1107.4 696 81.6
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1106.7 696 81.5
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1105.5 695 81.6
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1104.4 695 80.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1104.0 696 81.2
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1103.6 695 81.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1103.2 698 80.9
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1102.8 695 81.6
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1101.3 695 82.0
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1100.9 695 80.7
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1100.1 695 80.9
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1099.0 696 81.0
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1097.0 695 81.4
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1097.0 695 80.1
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1096.3 694 81.0
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1096.3 699 80.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1094.7 695 80.7
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1094.7 695 80.7
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1094.7 695 80.7
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1094.7 695 80.7
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1094.7 695 80.7
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1094.7 697 81.1
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1092.8 672 83.9
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1088.2 696 81.8
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1083.2 697 79.6
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1081.6 695 81.0
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1078.9 708 78.5
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1078.5 696 80.2
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 3.3e-308 1061.2 694 78.5
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 2.1e-307 1058.5 699 80.0
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 4.0e-306 1054.3 694 79.8
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 5.1e-301 1037.3 696 76.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.6e-294 1014.6 699 75.3
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 2.1e-286 988.8 695 73.2
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.8e-277 959.1 576 86.8
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 3.8e-264 914.8 698 67.8
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 5.0e-264 914.4 599 80.0
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 8.0e-262 907.1 696 65.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 1.0e-261 906.7 696 66.2
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 1.3e-259 899.8 525 86.5
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 1.9e-255 885.9 699 65.7
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 5.5e-255 884.4 546 83.9
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 4.5e-249 864.8 697 63.6
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 1.3e-248 863.2 714 61.6
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 1.9e-247 859.4 697 63.1
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 8.3e-227 790.8 471 84.3
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 9.0e-213 744.2 501 78.4
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 3.5e-185 652.5 720 47.9
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 5.9e-180 635.2 462 68.8
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.7e-155 553.9 320 84.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 5.2e-152 542.3 318 82.4
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 5.4e-133 479.2 357 71.4
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 5.2e-112 409.5 305 71.1
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.4e-101 374.0 378 52.6
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 6.2e-89 332.8 194 85.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 4.5e-87 326.6 190 82.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 8.8e-59 232.6 168 74.4
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.1e-56 225.7 143 85.3
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.7e-49 201.8 121 81.8
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.0e-48 196.4 121 80.2
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.5e-42 178.7 105 91.4
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.4e-35 155.6 101 82.2
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 6.8e-35 153.3 107 77.6
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.6e-34 151.4 96 84.4
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.4e-19 102.4 87 67.8
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.2e-19 100.5 142 44.4
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 8.9e-19 99.8 108 50.9
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 3.2e-16 91.3 96 54.2
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.3e-14 85.1 50 82.0
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.9e-14 84.3 52 76.9
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.9e-13 82.0 50 80.0
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 7.8e-07 60.1 36 77.8


User provided reference genes

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