Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 3.6e-88 328.2 159 100.0
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 4.7e-72 274.6 144 88.2
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 1.0e-71 273.5 151 86.1
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 3.0e-71 271.9 152 88.2
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 9.8e-70 266.9 158 80.4
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 3.1e-68 261.9 152 80.9
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 2.5e-65 252.3 153 79.7
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 2.5e-65 252.3 153 79.7
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 2.5e-65 252.3 153 79.7
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 5.5e-65 251.1 134 84.3
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.7e-64 248.8 156 73.7
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 3.6e-64 248.4 156 77.6
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 4.7e-64 248.1 153 76.5
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 6.1e-64 247.7 154 79.2
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.0e-63 246.9 153 75.8
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.0e-63 246.9 155 72.9
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 1.0e-63 246.9 155 72.9
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.0e-63 246.9 150 78.0
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 1.4e-63 246.5 149 79.2
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.4e-63 246.5 132 85.6
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 1.8e-63 246.1 153 77.8
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 2.3e-63 245.7 151 76.2
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 2.3e-63 245.7 134 84.3
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 5.2e-63 244.6 154 72.1
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 5.2e-63 244.6 156 76.3
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.2e-63 244.6 154 73.4
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.2e-63 244.6 157 72.6
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 6.8e-63 244.2 157 74.5
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 6.8e-63 244.2 134 81.3
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 8.8e-63 243.8 154 74.0
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 8.8e-63 243.8 154 74.0
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 1.5e-62 243.0 151 74.2
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.5e-62 243.0 156 73.7
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 1.5e-62 243.0 134 81.3
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 2.0e-62 242.7 150 74.7
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 2.6e-62 242.3 157 72.0
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 4.4e-62 241.5 136 79.4
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 4.4e-62 241.5 148 73.6
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 5.7e-62 241.1 153 73.9
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 5.7e-62 241.1 155 74.8
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 7.5e-62 240.7 161 73.3
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 7.5e-62 240.7 132 81.8
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 9.8e-62 240.4 152 73.0
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 9.8e-62 240.4 152 73.0
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 9.8e-62 240.4 152 73.0
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 9.8e-62 240.4 152 73.0
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 9.8e-62 240.4 152 73.0
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 9.8e-62 240.4 151 72.2
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 9.8e-62 240.4 151 74.2
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 9.8e-62 240.4 157 73.2
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 1.3e-61 240.0 151 74.2
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 1.3e-61 240.0 152 73.0
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.7e-61 239.6 151 74.2
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 1.7e-61 239.6 153 73.2
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 1.7e-61 239.6 150 74.0
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 2.2e-61 239.2 133 80.5
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 2.2e-61 239.2 150 75.3
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 2.2e-61 239.2 153 73.9
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 2.8e-61 238.8 154 73.4
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 3.7e-61 238.4 151 72.2
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 3.7e-61 238.4 150 74.0
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 6.3e-61 237.7 149 76.5
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 6.3e-61 237.7 149 76.5
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 6.3e-61 237.7 153 69.3
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 6.3e-61 237.7 151 70.9
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 6.3e-61 237.7 149 75.2
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 8.3e-61 237.3 150 70.7
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 8.3e-61 237.3 153 69.3
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 8.3e-61 237.3 153 69.3
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.1e-60 236.9 156 69.9
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 1.4e-60 236.5 156 70.5
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 1.4e-60 236.5 151 70.2
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.4e-60 236.5 134 79.9
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 1.8e-60 236.1 134 79.1
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 2.4e-60 235.7 149 73.2
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 3.1e-60 235.3 147 72.1
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 4.1e-60 235.0 148 73.0
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 4.1e-60 235.0 154 71.4
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 4.1e-60 235.0 154 73.4
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 5.4e-60 234.6 151 70.2
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 7.0e-60 234.2 157 70.7
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.2e-59 233.4 150 70.7
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 1.6e-59 233.0 154 70.1
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 2.0e-59 232.6 134 79.9
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 2.7e-59 232.3 151 72.8
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 2.7e-59 232.3 166 68.1
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 3.5e-59 231.9 154 69.5
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 5.9e-59 231.1 137 77.4
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.0e-58 230.3 153 71.9
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.0e-58 230.3 152 70.4
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.0e-58 230.3 155 71.0
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 1.3e-58 229.9 151 70.9
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 1.3e-58 229.9 137 76.6
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 5.0e-58 228.0 134 76.9
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 5.0e-58 228.0 134 76.9
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 6.6e-58 227.6 149 70.5
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 2.5e-57 225.7 154 68.2
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 3.3e-57 225.3 155 69.0
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 5.5e-57 224.6 154 66.2
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 7.2e-57 224.2 151 68.2
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 1.6e-56 223.0 154 70.1
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 8.0e-56 220.7 172 61.6
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.8e-55 219.5 150 68.7
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 2.3e-55 219.2 144 70.8
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 2.3e-55 219.2 126 77.8
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 7.5e-54 214.2 115 86.1
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 3.2e-52 208.8 149 65.1
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 5.4e-52 208.0 149 63.8
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 7.0e-52 207.6 202 55.0
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 9.2e-52 207.2 202 54.0
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.7e-51 205.7 204 52.5
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 8.6e-50 200.7 130 70.8
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 4.1e-44 181.8 149 58.4
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 7.0e-44 181.0 152 58.6
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 3.0e-42 175.6 157 59.9
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 8.6e-42 174.1 102 78.4
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 8.6e-42 174.1 97 81.4
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 6.2e-40 167.9 149 52.3
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.1e-31 140.6 79 81.0
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-23 111.7 83 62.7
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 5.8e-22 108.2 71 70.4
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.3e-16 90.5 155 36.1
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 4.8e-16 88.6 86 52.3
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.1e-12 77.4 130 33.1
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 4.0e-07 58.9 48 54.2


User provided reference genes

Program Settings