Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 4.0e-240 834.3 418 100.0
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 4.6e-228 794.3 418 96.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 7.4e-218 760.4 409 90.7
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.6e-212 741.1 413 89.1
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 4.6e-212 741.1 418 88.8
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 3.9e-211 738.0 417 89.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.1e-211 737.6 418 88.0
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 5.7e-210 734.2 413 87.7
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 3.7e-209 731.5 418 88.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 4.8e-209 731.1 413 87.9
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-208 729.9 414 88.4
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.4e-208 728.8 418 88.0
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 4.1e-208 728.0 412 88.6
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.0e-208 726.9 412 86.9
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-207 726.5 410 87.8
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.5e-207 726.1 408 87.7
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.0e-207 725.7 418 87.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 4.5e-207 724.5 412 87.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 4.5e-207 724.5 412 87.4
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.5e-207 724.5 412 86.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 5.9e-207 724.2 413 86.9
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.9e-207 724.2 417 88.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 7.7e-207 723.8 408 87.5
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.2e-205 718.4 415 86.5
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 5.5e-205 717.6 412 88.3
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 7.2e-205 717.2 416 87.3
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.2e-204 716.5 412 87.6
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.3e-203 712.2 410 87.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 3.9e-203 711.4 408 86.5
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 3.9e-203 711.4 411 86.1
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.1e-203 711.1 417 85.9
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.0e-202 709.1 416 85.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.6e-202 708.8 417 85.4
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 3.3e-202 708.4 420 85.5
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.3e-202 708.4 418 85.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 5.7e-202 707.6 413 86.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 4.8e-201 704.5 418 84.9
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.4e-200 703.0 412 84.2
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.4e-200 703.0 413 85.5
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 3.1e-200 701.8 416 85.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.5e-199 699.5 414 84.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.5e-199 699.5 415 84.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.0e-199 699.1 418 82.8
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.6e-199 698.7 414 85.3
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 4.5e-199 698.0 414 84.5
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.9e-198 695.3 415 85.1
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 3.8e-198 694.9 407 84.8
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 5.0e-198 694.5 415 84.3
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.5e-198 694.1 410 84.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.5e-198 693.7 414 84.3
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.4e-197 693.0 416 83.4
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.4e-197 693.0 415 84.3
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.4e-197 693.0 415 84.3
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 2.5e-197 692.2 415 84.3
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.5e-197 692.2 415 84.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.5e-197 692.2 409 84.8
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.5e-197 692.2 416 84.9
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 7.2e-197 690.6 415 84.3
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 7.2e-197 690.6 412 84.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 9.4e-197 690.3 421 84.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.6e-196 689.5 415 82.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.6e-196 689.5 413 84.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.6e-196 688.3 414 83.6
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.0e-195 686.8 416 82.9
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.4e-195 686.4 412 84.0
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 8.8e-195 683.7 410 83.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.1e-194 683.3 412 83.7
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 4.4e-194 681.4 412 83.3
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 9.7e-194 680.2 412 83.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.7e-193 679.5 414 82.4
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 4.8e-193 677.9 412 82.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.8e-193 677.9 414 82.4
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 4.8e-193 677.9 412 82.8
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 6.3e-193 677.6 410 81.7
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 8.2e-193 677.2 412 82.8
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 8.2e-193 677.2 412 82.5
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.4e-192 675.6 421 82.4
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.1e-192 675.2 412 82.5
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 3.1e-192 675.2 421 82.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 5.9e-191 671.0 412 82.3
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.3e-190 669.8 414 80.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.2e-190 669.1 418 81.1
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.5e-189 664.5 410 80.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 9.4e-189 663.7 414 80.4
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.1e-188 662.5 410 81.5
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 2.3e-187 659.1 411 80.8
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 4.0e-187 658.3 413 80.6
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.3e-186 655.2 411 80.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 7.5e-186 654.1 415 78.6
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.7e-185 651.7 419 78.5
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.2e-185 650.6 415 79.3
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 9.1e-184 647.1 419 77.6
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.1e-184 647.1 410 79.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.7e-183 645.6 419 77.3
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.5e-183 645.2 410 79.0
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.0e-182 643.7 416 77.4
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.0e-182 643.7 480 70.6
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 2.9e-182 642.1 419 77.6
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.1e-181 640.2 416 77.2
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 9.4e-181 637.1 415 77.6
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 9.4e-181 637.1 415 77.6
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.6e-180 635.2 409 78.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.1e-180 634.4 410 78.5
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.8e-179 632.9 409 78.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.8e-179 632.9 409 78.2
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.3e-179 632.5 417 77.9
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.3e-179 632.5 409 78.0
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-179 632.1 409 78.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 8.8e-179 630.6 420 77.4
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 7.5e-178 627.5 405 77.8
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 7.5e-178 627.5 409 77.5
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 7.5e-178 627.5 405 77.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.7e-177 626.3 409 77.3
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.7e-177 626.3 409 77.3
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.8e-177 625.5 406 78.3
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.3e-177 624.4 369 85.1
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.3e-177 624.4 409 77.5
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.4e-176 622.5 429 72.3
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 4.2e-173 611.7 414 73.9
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 9.5e-173 610.5 436 72.7
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.7e-172 608.2 410 74.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.0e-170 602.8 407 73.5
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.9e-169 598.2 407 73.5
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.1e-168 597.0 413 73.4
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 5.9e-167 591.3 416 73.6
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 5.0e-166 588.2 407 75.9
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 5.0e-166 588.2 410 74.9
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 7.3e-165 584.3 407 71.5
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.8e-163 579.7 415 75.4
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.8e-163 579.7 338 84.9
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-162 576.2 417 71.0
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 9.2e-160 567.4 423 69.3
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.2e-159 567.0 358 80.4
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.7e-159 565.8 413 70.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.9e-159 564.7 410 70.5
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.8e-155 553.1 408 70.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.4e-154 548.5 438 66.2
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.8e-154 547.4 425 66.8
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.1e-152 543.9 409 70.7
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-152 543.1 427 65.8
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.0e-152 541.2 425 65.4
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.7e-145 518.8 410 67.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.4e-145 518.1 425 64.2
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.7e-142 510.0 390 67.2
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.3e-141 505.8 424 62.5
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.0e-134 484.2 411 60.1
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 6.6e-134 481.5 411 59.1
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 3.5e-119 432.6 417 58.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.9e-114 414.5 411 56.4
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.3e-109 399.4 267 78.3
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.2e-72 276.2 149 92.6
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.8e-70 270.8 149 91.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.0e-70 269.6 158 85.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 4.8e-68 262.7 150 87.3
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-64 250.8 145 86.2
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.6e-50 204.5 163 61.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.0e-49 201.8 163 60.7
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.8e-49 199.9 160 61.2
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.5e-48 197.2 160 60.6
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 7.0e-43 179.1 123 74.0
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.6e-39 166.8 98 83.7
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.0e-25 122.1 115 59.1
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.1e-22 110.5 315 28.9
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-20 105.1 186 34.9
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 3.8e-20 103.6 60 86.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.0e-17 94.0 185 33.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-16 91.7 212 33.0
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.5e-16 90.9 123 38.2
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 4.3e-16 90.1 86 53.5
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 9.6e-16 89.0 100 53.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.1e-14 85.5 70 71.4


User provided reference genes

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