Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 0.0e+00 1533.5 817 100.0
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 0.0e+00 1146.0 784 73.6
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 0.0e+00 1082.8 787 69.3
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 0.0e+00 1075.8 767 72.9
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 2.2e-311 1072.0 769 72.3
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 5.0e-311 1070.8 776 71.5
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 1.1e-310 1069.7 774 71.6
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 4.2e-310 1067.8 776 71.6
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 3.3e-307 1058.1 782 68.4
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 2.9e-303 1045.0 765 70.8
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 3.0e-300 1035.0 817 67.3
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 3.6e-293 1011.5 763 68.9
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 1.1e-289 1000.0 803 65.4
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 2.4e-289 998.8 812 64.9
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 4.3e-286 988.0 697 72.7
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 9.5e-286 986.9 808 64.1
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 2.0e-283 979.2 704 72.9
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 6.4e-282 974.2 676 73.2
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.9e-281 972.6 754 68.8
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 7.8e-280 967.2 807 63.1
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 7.8e-280 967.2 807 63.1
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 1.0e-279 966.8 601 77.2
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 1.3e-279 966.5 751 65.8
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 5.0e-279 964.5 750 69.3
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 6.6e-279 964.1 777 63.8
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.1e-278 963.4 813 62.1
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 1.1e-278 963.4 800 63.6
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 5.6e-278 961.1 749 68.9
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 5.6e-278 961.1 735 66.4
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 3.6e-277 958.4 759 68.2
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 6.2e-277 957.6 690 69.9
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 8.0e-277 957.2 678 69.5
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.2e-275 953.4 759 67.9
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 1.5e-275 953.0 732 66.7
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 1.1e-273 946.8 711 68.6
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 1.7e-271 939.5 805 61.1
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 7.3e-270 934.1 825 60.2
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 3.1e-268 928.7 740 66.6
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 7.8e-264 914.1 793 59.8
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 4.3e-262 908.3 683 66.9
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 3.6e-261 905.2 747 64.5
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 4.7e-261 904.8 589 75.0
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 8.1e-261 904.0 775 63.9
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 1.4e-260 903.3 707 67.2
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 3.4e-259 898.7 733 63.4
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 3.8e-258 895.2 702 67.4
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 4.9e-258 894.8 742 62.5
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 8.4e-258 894.0 766 59.9
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 1.4e-257 893.3 736 63.7
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 2.4e-257 892.5 774 60.2
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 1.2e-256 890.2 690 66.2
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 4.6e-256 888.3 759 62.1
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 6.0e-256 887.9 736 62.4
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 1.7e-255 886.3 717 66.0
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 2.3e-255 885.9 717 64.4
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 5.1e-255 884.8 529 75.2
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 5.1e-255 884.8 721 63.4
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.1e-254 883.6 797 61.1
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 2.5e-254 882.5 750 62.0
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 9.6e-254 880.6 683 64.9
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 3.6e-253 878.6 700 66.4
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 6.2e-253 877.9 793 61.4
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 8.1e-253 877.5 782 61.0
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 1.4e-252 876.7 740 61.1
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 9.0e-252 874.0 698 66.2
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 1.2e-251 873.6 782 58.2
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 2.0e-251 872.8 739 62.0
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 2.6e-251 872.5 729 63.2
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 7.6e-251 870.9 754 60.9
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 8.4e-250 867.5 753 61.8
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 3.2e-249 865.5 761 62.0
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 4.8e-245 851.7 695 64.6
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 2.4e-244 849.4 800 57.9
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 2.4e-244 849.4 701 63.3
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 9.9e-243 844.0 709 62.9
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 2.3e-239 832.8 745 59.7
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 8.7e-239 830.9 796 60.9
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 1.1e-238 830.5 689 65.6
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.1e-236 823.9 889 53.4
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 1.5e-235 820.1 702 61.8
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 3.9e-231 805.4 720 57.8
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 3.1e-228 795.8 807 54.4
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 4.0e-228 795.4 804 54.5
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 8.2e-221 771.2 715 58.3
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 1.9e-217 760.0 755 55.9
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 2.9e-210 736.1 724 57.5
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 7.4e-206 721.5 399 99.7
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 3.7e-205 719.2 555 66.5
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 5.2e-199 698.7 495 73.9
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.2e-168 597.8 789 46.8
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 2.4e-156 557.0 401 66.8
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 3.2e-156 556.6 460 57.8
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.1e-156 556.2 334 74.9
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 9.2e-156 555.1 530 50.9
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.1e-152 543.9 521 61.2
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 5.2e-143 512.7 405 66.4
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 8.4e-141 505.4 498 58.4
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 2.4e-140 503.8 632 46.5
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.4e-127 460.7 287 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 8.4e-109 399.1 346 54.0
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.9e-108 397.9 373 54.4
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 8.8e-98 362.5 196 84.2
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 7.9e-91 339.3 188 79.3
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 2.6e-89 334.3 350 50.6
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 2.0e-86 324.7 513 46.4
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 1.9e-68 265.0 169 69.2
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 2.4e-55 221.5 264 57.2
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.8e-34 152.1 148 54.1
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.4e-31 142.5 83 74.7
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-30 138.7 379 30.1
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 9.9e-25 119.8 108 74.1
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.3e-21 108.6 113 47.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.0e-18 97.8 77 58.4
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.5e-17 95.9 72 54.2
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 2.4e-15 88.6 278 34.9
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 7.1e-07 60.5 87 49.4


User provided reference genes

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