Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.2e-158 563.1 293 100.0
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 5.1e-133 478.0 282 90.1
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 2.1e-126 456.1 282 84.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 4.5e-121 438.3 275 83.6
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.0e-120 437.2 282 81.2
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.3e-120 436.8 282 79.1
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 5.0e-120 434.9 286 80.4
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.6e-118 429.9 285 78.9
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 2.0e-116 422.9 296 75.0
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.3e-116 422.2 277 81.6
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 7.4e-116 421.0 286 76.9
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.3e-115 420.2 285 78.2
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.2e-115 417.5 285 76.8
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 1.8e-114 416.4 285 75.8
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.8e-114 416.4 285 76.1
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 2.4e-114 416.0 285 76.5
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 3.1e-114 415.6 285 75.8
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 4.1e-114 415.2 285 77.2
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 5.3e-114 414.8 285 76.5
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 2.0e-113 412.9 285 74.7
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 2.6e-113 412.5 290 74.8
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.5e-113 412.1 285 74.4
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 3.5e-113 412.1 285 74.4
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 3.5e-113 412.1 286 76.2
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 4.5e-113 411.8 289 75.8
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 5.9e-113 411.4 290 74.5
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 5.9e-113 411.4 289 75.1
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 5.9e-113 411.4 275 76.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 5.9e-113 411.4 286 74.8
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 7.7e-113 411.0 283 75.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 7.7e-113 411.0 285 75.4
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 7.7e-113 411.0 285 75.1
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 1.3e-112 410.2 285 75.1
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 1.7e-112 409.8 288 75.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.7e-112 409.8 285 74.0
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.2e-112 409.5 285 73.3
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 2.9e-112 409.1 285 74.7
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 2.9e-112 409.1 287 74.9
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 2.9e-112 409.1 276 77.2
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 6.5e-112 407.9 285 74.7
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 6.5e-112 407.9 290 72.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 8.5e-112 407.5 285 73.7
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 1.5e-111 406.8 285 74.4
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.5e-111 406.8 289 74.4
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 2.5e-111 406.0 287 76.0
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.5e-111 406.0 285 74.0
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 3.2e-111 405.6 287 72.1
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 7.2e-111 404.4 286 74.5
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 7.2e-111 404.4 286 74.5
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 7.2e-111 404.4 286 74.5
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 7.2e-111 404.4 290 72.4
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 9.4e-111 404.1 289 74.0
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.1e-110 402.9 286 74.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 2.1e-110 402.9 285 74.0
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.0e-109 400.6 286 74.1
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 3.0e-109 399.1 293 73.4
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 4.0e-109 398.7 285 72.3
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 2.0e-108 396.4 285 72.3
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 3.3e-108 395.6 285 72.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 3.3e-108 395.6 285 72.3
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 4.4e-108 395.2 285 71.2
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 4.4e-108 395.2 285 71.2
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 4.4e-108 395.2 285 71.9
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 4.4e-108 395.2 285 75.4
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.7e-107 393.3 290 71.0
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.7e-107 393.3 290 71.0
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.2e-107 392.9 286 72.0
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 2.2e-107 392.9 291 70.8
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 2.2e-107 392.9 290 70.7
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 2.2e-107 392.9 290 70.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 2.2e-107 392.9 285 71.6
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 3.7e-107 392.1 287 72.1
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 4.8e-107 391.7 286 71.7
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 4.8e-107 391.7 286 71.7
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 4.8e-107 391.7 286 71.7
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.1e-106 390.6 285 72.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.4e-106 390.2 285 71.6
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 2.4e-106 389.4 286 71.0
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 4.1e-106 388.7 289 69.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 7.0e-106 387.9 286 71.3
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.2e-105 387.1 274 73.4
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.2e-105 387.1 286 71.3
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 7.7e-105 384.4 314 66.2
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 2.2e-104 382.9 309 66.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 8.5e-104 380.9 285 71.6
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 1.6e-102 376.7 283 70.3
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.1e-102 376.3 294 66.7
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 3.6e-102 375.6 285 68.4
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 4.7e-102 375.2 285 69.8
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 4.7e-102 375.2 285 70.2
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 5.2e-101 371.7 285 68.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 6.8e-101 371.3 285 70.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 6.8e-101 371.3 277 71.5
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 1.5e-100 370.2 291 68.4
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.5e-100 370.2 283 69.6
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 4.8e-99 365.2 277 69.7
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 6.3e-99 364.8 287 66.9
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.8e-98 363.2 277 70.8
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.4e-98 362.8 286 66.8
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 3.1e-98 362.5 276 67.8
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 7.0e-98 361.3 273 69.6
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 7.0e-98 361.3 273 69.6
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 9.1e-98 360.9 276 69.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 1.6e-97 360.1 287 67.6
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.0e-93 347.4 288 62.8
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 2.2e-91 339.7 273 64.8
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 3.6e-86 322.4 268 66.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 4.0e-85 318.9 298 59.1
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 3.0e-80 302.8 276 57.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 8.0e-78 294.7 297 57.6
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 8.0e-78 294.7 285 56.1
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 3.4e-76 289.3 277 54.9
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 7.5e-76 288.1 278 52.5
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.3e-75 287.3 279 53.4
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 9.2e-74 281.2 274 55.1
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.6e-73 280.4 279 55.2
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.5e-73 279.3 257 57.2
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.6e-70 269.2 189 78.3
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.3e-67 260.8 331 46.5
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 4.6e-65 252.3 252 53.6
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 3.0e-64 249.6 282 49.6
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 9.2e-58 228.0 285 43.9
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 3.6e-54 216.1 163 71.2
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 4.8e-54 215.7 286 45.5
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 3.2e-42 176.4 106 81.1
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.1e-42 175.3 218 47.7
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 3.7e-38 162.9 282 38.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 4.8e-38 162.5 319 32.3
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 7.6e-36 155.2 232 41.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.3e-32 144.4 99 74.7
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 3.9e-32 142.9 92 77.2
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 1.5e-31 141.0 343 28.6
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 9.6e-31 138.3 93 73.1
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 4.8e-30 136.0 294 38.1
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 7.6e-28 128.6 92 66.3
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.0e-27 128.3 291 36.8
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.2e-27 127.1 114 61.4
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.1e-26 124.8 113 61.1
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.4e-26 124.4 85 70.6
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 1.9e-26 124.0 77 80.5
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 4.2e-26 122.9 123 56.1
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 5.5e-26 122.5 316 29.4
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.5e-25 119.8 66 92.4
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.6e-25 119.4 81 77.8
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 6.7e-24 115.5 90 64.4
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 3.7e-22 109.8 164 40.2
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.2e-19 100.5 165 42.4
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.7e-09 66.2 56 58.9
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 4.8e-06 56.2 36 72.2
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 4.8e-06 56.2 39 64.1
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 6.3e-06 55.8 36 77.8


User provided reference genes

Program Settings