Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu049932.2 Olea europaea HOM05D000604 ORTHO05D004512 7.7e-97 357.5 223 100.0
Oeu028231.1 Olea europaea HOM05D000604 ORTHO05D004512 9.8e-76 287.3 238 80.3
Oeu026653.1 Olea europaea HOM05D000604 ORTHO05D004512 1.6e-73 280.0 175 82.9
Migut.K01228 Erythranthe guttata HOM05D000604 ORTHO05D004512 5.4e-58 228.4 225 70.2
Migut.J00575 Erythranthe guttata HOM05D000604 ORTHO05D004512 1.6e-57 226.9 234 65.4
SalBow6G2614 Salvia bowleyana HOM05D000604 ORTHO05D004512 5.0e-56 221.9 177 67.2
Cc02_g32830 Coffea canephora HOM05D000604 ORTHO05D004512 1.1e-53 214.2 173 63.6
CSS0015734 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.2e-52 210.7 251 64.1
CSS0037056 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.5e-52 210.3 178 62.9
CSS0048299 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.5e-52 210.3 178 62.9
MSTRG.18261 Avicennia marina HOM05D000604 ORTHO05D004512 3.4e-52 209.1 176 65.3
Nitab4.5_0000245g0230 Nicotiana tabacum HOM05D000604 ORTHO05D004512 1.9e-50 203.4 169 63.9
Nitab4.5_0001165g0020 Nicotiana tabacum HOM05D000604 ORTHO05D004512 1.9e-50 203.4 170 63.5
PGSC0003DMG400022453 Solanum tuberosum HOM05D000604 ORTHO05D004512 1.9e-50 203.4 163 66.9
Solyc01g098350.3 Solanum lycopersicum HOM05D000604 ORTHO05D004512 3.2e-50 202.6 164 67.1
Sopen01g041910 Solanum pennellii HOM05D000604 ORTHO05D004512 3.2e-50 202.6 164 67.1
TAR633G1789 Trochodendron aralioides HOM05D000604 ORTHO05D004512 1.2e-49 200.7 169 63.3
SGA_v2.0_scaffold192G40625 Striga asiatica HOM05D000604 ORTHO05D004512 2.1e-49 199.9 150 72.0
Peaxi162Scf00225g00622 Petunia axillaris HOM05D000604 ORTHO05D004512 3.5e-49 199.1 156 66.0
TAR633G2382 Trochodendron aralioides HOM05D000604 ORTHO05D004512 3.5e-49 199.1 169 62.7
Nn3g21243 Nelumbo nucifera HOM05D000604 ORTHO05D004512 1.3e-48 197.2 175 61.1
Rhsim05G0146600 Rhododendron simsii HOM05D000604 ORTHO05D004512 1.3e-48 197.2 173 62.4
unitig_750.g28505 Utricularia gibba HOM05D000604 ORTHO05D004512 5.1e-48 195.3 170 61.2
Nn4g26073 Nelumbo nucifera HOM05D000604 ORTHO05D004512 8.6e-48 194.5 240 60.8
Dinv01785 Davidia involucrata HOM05D000604 ORTHO05D004512 1.5e-47 193.7 173 61.8
Hma1.2p1_0702F.1_g206100 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 1.9e-47 193.4 178 61.8
Hma1.2p1_0071F.1_g037955 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 2.5e-47 193.0 171 63.2
Aqoxy3G00886 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 2.8e-46 189.5 176 60.8
Actinidia28390 Actinidia chinensis HOM05D000604 ORTHO05D004512 3.6e-46 189.1 165 62.4
TWI38G0373 Tripterygium wilfordii HOM05D000604 ORTHO05D004512 4.7e-46 188.7 178 59.0
Atru.chr12.650 Acer truncatum HOM05D000604 ORTHO05D004512 6.2e-46 188.3 239 62.3
Atru.chr12.677 Acer truncatum HOM05D000604 ORTHO05D004512 6.2e-46 188.3 239 62.3
CAN.G134.221 Capsicum annuum HOM05D000604 ORTHO05D004512 6.2e-46 188.3 161 64.0
CsaV3_1G038950 Cucumis sativus L. HOM05D000604 ORTHO05D004512 2.3e-45 186.4 240 60.8
Duzib128G0428 Durio zibethinus HOM05D000604 ORTHO05D004512 2.3e-45 186.4 174 58.0
Thecc.10G069000 Theobroma cacao HOM05D000604 ORTHO05D004512 3.1e-45 186.0 172 61.0
Aqoxy1G02180 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 4.0e-45 185.7 176 59.7
Hund07022 Selenicereus undatus HOM05D000604 ORTHO05D004512 4.0e-45 185.7 171 59.6
vmacro19657 Vaccinium macrocarpon HOM05D000604 ORTHO05D004512 5.2e-45 185.3 166 59.6
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 6.8e-45 184.9 236 63.1
MBI18_g38867_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004512 1.2e-44 184.1 168 57.7
ECA232G0151 Erigeron canadensis HOM05D000604 ORTHO05D004512 1.5e-44 183.7 232 58.2
ClCG03G016990 Citrullus lanatus HOM05D000604 ORTHO05D004512 3.4e-44 182.6 240 61.7
CiPaw.01G204800 Carya illinoinensis HOM05D000604 ORTHO05D004512 4.4e-44 182.2 168 58.9
CiPaw.02G127200 Carya illinoinensis HOM05D000604 ORTHO05D004512 4.4e-44 182.2 168 58.9
COL.COLO4_23726 Corchorus olitorius HOM05D000604 ORTHO05D004512 2.2e-43 179.9 171 58.5
Lalb_Chr21g0310821 Lupinus albus HOM05D000604 ORTHO05D004512 2.2e-43 179.9 176 58.0
MD04G1213300 Malus domestica HOM05D000604 ORTHO05D004512 2.2e-43 179.9 165 60.6
VMungo0720G1625 Vigna mungo HOM05D000604 ORTHO05D004512 4.9e-43 178.7 177 57.1
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 6.4e-43 178.3 165 57.0
TAR362G0854 Trochodendron aralioides HOM05D000604 ORTHO05D004512 6.4e-43 178.3 166 59.0
Prupe.6G333200 Prunus persica HOM05D000604 ORTHO05D004512 1.1e-42 177.6 170 57.6
QL06p022999 Quercus lobata HOM05D000604 ORTHO05D004512 1.9e-42 176.8 163 61.3
Ciclev10031535m.g Citrus clementina HOM05D000604 ORTHO05D004512 3.2e-42 176.0 164 59.1
MD12G1227500 Malus domestica HOM05D000604 ORTHO05D004512 3.2e-42 176.0 173 56.6
Potri.008G043600 Populus trichocarpa HOM05D000604 ORTHO05D004512 3.2e-42 176.0 176 58.5
Cfa002807 Carpinus fangiana HOM05D000604 ORTHO05D004512 5.4e-42 175.3 165 58.8
Medtr5g010140 Medicago truncatula HOM05D000604 ORTHO05D004512 5.4e-42 175.3 177 55.4
Phvul.007G183500 Phaseolus vulgaris HOM05D000604 ORTHO05D004512 5.4e-42 175.3 177 55.9
Sabra08G0030100 Salix brachista HOM05D000604 ORTHO05D004512 9.2e-42 174.5 175 58.3
Ca_02808_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 1.2e-41 174.1 178 54.5
Glyma.10G158100 Glycine max HOM05D000604 ORTHO05D004512 1.6e-41 173.7 170 57.6
Manes.08G028200 Manihot esculenta HOM05D000604 ORTHO05D004512 1.6e-41 173.7 170 58.2
CDE11G1039 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 2.7e-41 172.9 134 64.2
QL07p023602 Quercus lobata HOM05D000604 ORTHO05D004512 2.7e-41 172.9 168 58.3
Sed0027198 Sechium edule HOM05D000604 ORTHO05D004512 3.5e-41 172.6 176 55.7
Sc16g0008250 Simmondsia chinensis HOM05D000604 ORTHO05D004512 4.6e-41 172.2 171 56.1
PSO161G0104 Papaver somniferum HOM05D000604 ORTHO05D004512 6.0e-41 171.8 238 59.7
Ca_14509_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 7.8e-41 171.4 178 54.5
Lsat_1_v5_gn_9_71340 Lactuca sativa HOM05D002827 ORTHO05D004512 1.0e-40 171.0 113 71.7
GSVIVG01020870001 Vitis vinifera HOM05D000604 ORTHO05D004512 1.7e-40 170.2 172 57.6
AUR62000905 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.3e-40 169.9 175 52.6
TPR.G6694 Trifolium pratense HOM05D000604 ORTHO05D004512 3.0e-40 169.5 177 53.7
AUR62036638 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.9e-40 169.1 158 56.3
arahy.Tifrunner.gnm1.ann1.LQ82RV Arachis hypogaea HOM05D000604 ORTHO05D004512 5.1e-40 168.7 176 54.5
Glyma.20G230500 Glycine max HOM05D000604 ORTHO05D004512 5.1e-40 168.7 166 58.4
Lj3g0003298 Lotus japonicus HOM05D000604 ORTHO05D004512 5.1e-40 168.7 176 54.5
Haze_25104 Corylus avellana HOM05D000258 ORTHO05D000153 6.6e-40 168.3 152 59.9
SEGI_04759 Sequoiadendron giganteum HOM05D000604 ORTHO05D004512 6.6e-40 168.3 174 53.4
HanXRQChr15g0464271 Helianthus annuus HOM05D000604 ORTHO05D004512 1.1e-39 167.5 157 57.3
Lj9A677G36 Lonicera japonica HOM05D000604 ORTHO05D004512 1.1e-39 167.5 87 86.2
Medtr5g055170 Medicago truncatula HOM05D000604 ORTHO05D004512 1.9e-39 166.8 173 53.8
RcHm_v2.0_Chr3g0453411 Rosa chinensis HOM05D000604 ORTHO05D004512 2.5e-39 166.4 160 56.9
HPP92_017559 Vanilla planifolia HOM05D000604 ORTHO05D004512 2.5e-39 166.4 170 54.7
arahy.Tifrunner.gnm1.ann1.EVL1N6 Arachis hypogaea HOM05D000604 ORTHO05D004512 9.6e-39 164.5 175 53.7
Gorai.002G143200 Gossypium raimondii HOM05D000604 ORTHO05D004512 9.6e-39 164.5 142 61.3
Aa31LG5G9440 Aethionema arabicum HOM05D000604 ORTHO05D004512 1.6e-38 163.7 153 60.1
CDE05G3027 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 1.6e-38 163.7 153 56.2
ATR0706G007 Amborella trichopoda HOM05D000604 ORTHO05D004512 4.7e-38 162.2 176 51.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 6.2e-38 161.8 136 60.3
SHI08941 Sapria himalayana HOM05D000604 ORTHO05D004512 1.1e-37 161.0 166 55.4
FvH4_6g04870 Fragaria vesca HOM05D000604 ORTHO05D004512 1.8e-37 160.2 156 56.4
FAN05G3414 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.8e-37 160.2 156 56.4
FAN14G1953 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.8e-37 160.2 156 56.4
EL10Ac4g09280 Beta vulgaris HOM05D000604 ORTHO05D004512 2.4e-37 159.8 86 83.7
Sp1g23300 Schrenkiella parvula HOM05D000604 ORTHO05D004512 2.4e-37 159.8 159 57.9
AUR62005070 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.1e-37 159.5 96 78.1
FAN09G4787 Fragaria x ananassa HOM05D000604 ORTHO05D004512 3.1e-37 159.5 160 55.0
FAN02G4461 Fragaria x ananassa HOM05D000604 ORTHO05D004512 4.0e-37 159.1 156 56.4
FAN05G3826 Fragaria x ananassa HOM05D000604 ORTHO05D004512 5.2e-37 158.7 156 55.8
A07p12190 Brassica napus HOM05D000604 ORTHO05D004512 8.9e-37 157.9 147 59.2
BraA07t29003Z Brassica rapa HOM05D000604 ORTHO05D004512 8.9e-37 157.9 147 59.2
Eucgr.H04430 Eucalyptus grandis HOM05D000604 ORTHO05D004512 1.5e-36 157.1 172 52.9
CANSAT01G1793 Cannabis sativa HOM05D000604 ORTHO05D004512 2.0e-36 156.8 157 54.8
Nitab4.5_0005181g0060 Nicotiana tabacum HOM05D000604 ORTHO05D004512 2.0e-36 156.8 120 64.2
PGR031G1961 Punica granatum HOM05D000604 ORTHO05D004512 2.0e-36 156.8 162 55.6
CANSAT54G2755 Cannabis sativa HOM05D000604 ORTHO05D004512 3.4e-36 156.0 157 53.5
Actinidia19815 Actinidia chinensis HOM05D000604 ORTHO05D004512 4.4e-36 155.6 96 79.2
Cpa.g.sc81.66 Carica papaya HOM05D000604 ORTHO05D004512 4.4e-36 155.6 102 72.5
Gohir.D01G117700 Gossypium hirsutum HOM05D000604 ORTHO05D004512 4.4e-36 155.6 86 84.9
C07p18150 Brassica napus HOM05D000604 ORTHO05D004512 5.8e-36 155.2 172 54.7
BolC7t42325H Brassica oleracea HOM05D000604 ORTHO05D004512 9.9e-36 154.5 174 54.0
Gohir.A01G133500 Gossypium hirsutum HOM05D000604 ORTHO05D004512 1.3e-35 154.1 134 61.2
DCAR_020452 Daucus carota HOM05D000604 ORTHO05D004512 1.7e-35 153.7 162 53.7
Thhalv10007728m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 1.7e-35 153.7 143 58.0
Carub.0004s0633 Capsella rubella HOM05D000604 ORTHO05D004512 2.9e-35 152.9 150 56.7
Prupe.7G087700 Prunus persica HOM05D000604 ORTHO05D004512 2.9e-35 152.9 121 60.3
AT2G26430 Arabidopsis thaliana HOM05D000604 ORTHO05D004512 6.4e-35 151.8 164 53.7
AL4G19120 Arabidopsis lyrata HOM05D000604 ORTHO05D004512 8.4e-35 151.4 149 57.7
CARHR118360 Cardamine hirsuta HOM05D000604 ORTHO05D004512 1.9e-34 150.2 171 52.0
Sp4g07260 Schrenkiella parvula HOM05D000604 ORTHO05D004512 2.4e-34 149.8 151 56.3
Os01g0377500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004512 3.2e-34 149.4 165 51.5
A09p38800 Brassica napus HOM05D000604 ORTHO05D004512 4.2e-34 149.1 151 54.3
THA.LOC104826738 Tarenaya hassleriana HOM05D000604 ORTHO05D004512 1.2e-33 147.5 147 57.1
Lj6A239T12 Lonicera japonica HOM05D000604 ORTHO05D004512 5.1e-32 142.1 74 83.8
Migut.N00466 Erythranthe guttata HOM05D000604 ORTHO05D004512 3.3e-31 139.4 79 81.0
VMungo0720G1622 Vigna mungo HOM05D000604 ORTHO05D004512 3.3e-31 139.4 115 57.4
Lsat_1_v5_gn_8_124560 Lactuca sativa HOM05D000604 ORTHO05D004512 9.6e-31 137.9 106 60.4
Zm00001eb307170 Zea mays HOM05D000604 ORTHO05D004512 1.3e-30 137.5 125 56.8
Lj6C239T2 Lonicera japonica HOM05D000604 ORTHO05D004512 2.8e-30 136.3 75 78.7
Zm00001eb048550 Zea mays HOM05D000604 ORTHO05D004512 4.8e-30 135.6 146 52.7
Lj6P238T8 Lonicera japonica HOM05D000604 ORTHO05D004512 6.2e-30 135.2 74 81.1
Lsat_1_v5_gn_8_124580 Lactuca sativa HOM05D000604 ORTHO05D004512 1.1e-29 134.4 106 58.5
AagrBONN_evm.TU.Sc2ySwM_344.3972 Anthoceros agrestis HOM05D000604 ORTHO05D004512 2.4e-29 133.3 90 65.6
Lsat_1_v5_gn_0_34680 Lactuca sativa HOM05D000604 ORTHO05D004512 2.6e-28 129.8 142 50.7
Thhalv10027406m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 7.6e-28 128.3 68 86.8
Mapoly0037s0071 Marchantia polymorpha HOM05D000604 ORTHO05D004512 2.2e-27 126.7 104 59.6
SMO171G0100 Selaginella moellendorffii HOM05D000604 ORTHO05D004512 2.2e-27 126.7 158 46.2
CBR_g41142 Chara braunii HOM05D000604 ORTHO05D004512 1.1e-26 124.4 87 63.2
Peaxi162Scf00202g00034 Petunia axillaris HOM05D000604 ORTHO05D004512 1.1e-26 124.4 64 84.4
Peaxi162Scf00132g00024 Petunia axillaris HOM05D000604 ORTHO05D004512 1.9e-26 123.6 63 87.3
Peaxi162Scf00690g00025 Petunia axillaris HOM05D003992 ORTHO05D004329 9.3e-26 121.3 60 90.0
PGSC0003DMG400003689 Solanum tuberosum HOM05D000604 ORTHO05D004512 7.9e-25 118.2 60 86.7
Oeu052139.1 Olea europaea HOM05D000604 ORTHO05D004512 1.0e-24 117.9 105 66.7
Lj6C237T1 Lonicera japonica HOM05D000604 ORTHO05D004512 9.6e-23 111.3 72 69.4
Psat2g184680 Pisum sativum HOM05D000604 ORTHO05D004512 2.8e-22 109.8 103 52.4
ATR1149G096 Amborella trichopoda HOM05D000604 ORTHO05D004512 3.6e-22 109.4 83 60.2
Pp3c9_26180 Physcomitrium patens HOM05D000604 ORTHO05D004512 1.1e-21 107.8 85 57.6
C05p25700 Brassica napus HOM05D000604 ORTHO05D004512 4.9e-19 99.0 67 65.7
Thhalv10001260m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 8.4e-19 98.2 90 62.2
FAN14G1660 Fragaria x ananassa HOM05D000604 ORTHO05D004512 8.4e-19 98.2 156 44.2
FAN14G4098 Fragaria x ananassa HOM05D000604 ORTHO05D004512 8.4e-19 98.2 156 44.2
Sabra10G0168700 Salix brachista HOM05D000604 ORTHO05D004512 1.9e-18 97.1 79 58.2
Pp3c15_25980 Physcomitrium patens HOM05D000604 ORTHO05D004512 3.2e-18 96.3 159 38.4
Cre07.g321650 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004512 3.3e-15 86.3 73 56.2
Peaxi162Scf01056g00011 Petunia axillaris HOM05D000604 ORTHO05D004512 9.6e-15 84.7 64 60.9
MCO04G357 Micromonas commoda HOM05D000604 ORTHO05D004512 9.0e-13 78.2 80 43.8


User provided reference genes

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