Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 8.5e-111 403.7 202 100.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 8.3e-90 334.0 187 85.6
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 9.4e-86 320.5 189 83.1
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 3.0e-84 315.5 232 69.4
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-83 313.2 225 72.0
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-83 313.2 225 72.0
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.5e-83 313.2 225 72.0
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.0e-83 312.8 225 70.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.4e-83 311.6 228 69.7
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.4e-83 311.6 231 68.4
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.7e-82 309.7 225 70.7
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.7e-82 309.7 228 69.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.2e-82 309.3 232 68.1
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.8e-82 308.9 228 68.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.7e-82 308.5 233 67.8
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 4.8e-82 308.1 227 69.2
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 4.8e-82 308.1 232 67.7
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 6.3e-82 307.8 225 70.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 6.3e-82 307.8 233 67.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.3e-82 307.8 227 70.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.3e-82 307.8 227 70.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 8.3e-82 307.4 228 69.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.1e-81 307.0 228 68.9
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.4e-81 306.6 233 66.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.4e-81 306.6 230 67.4
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.8e-81 306.2 229 68.1
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.4e-81 305.8 233 67.8
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.4e-81 305.8 227 68.7
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.4e-81 305.8 254 63.4
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.4e-81 305.8 225 69.8
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 3.1e-81 305.4 235 66.8
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 4.1e-81 305.1 226 69.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 4.1e-81 305.1 229 67.2
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.1e-81 305.1 225 69.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 5.4e-81 304.7 233 67.4
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 7.0e-81 304.3 231 67.1
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 9.1e-81 303.9 232 67.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.1e-81 303.9 232 65.9
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.1e-81 303.9 229 67.2
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.6e-80 303.1 230 68.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.6e-80 303.1 229 67.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.6e-80 303.1 232 67.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.6e-80 303.1 225 68.4
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.0e-80 302.8 229 66.8
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.7e-80 302.4 228 66.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.7e-80 302.4 226 67.7
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.5e-80 302.0 225 68.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 4.5e-80 301.6 232 67.2
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.9e-80 301.2 225 68.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 7.7e-80 300.8 227 67.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-79 300.1 230 66.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-79 300.1 233 64.8
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.7e-79 299.7 230 66.1
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.7e-79 299.7 227 67.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.3e-79 299.3 222 69.4
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.9e-79 298.9 230 65.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.9e-79 298.9 228 65.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 3.8e-79 298.5 225 66.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.8e-79 298.5 225 66.7
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.8e-79 298.5 228 66.2
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.8e-79 298.5 225 67.6
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.0e-79 298.1 230 65.7
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 6.6e-79 297.7 230 64.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 6.6e-79 297.7 226 66.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 8.6e-79 297.4 228 66.7
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 8.6e-79 297.4 225 67.6
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.1e-78 297.0 228 66.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-78 297.0 226 67.7
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-78 296.6 228 65.8
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.5e-78 295.8 228 66.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 3.3e-78 295.4 228 65.4
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.3e-78 295.4 230 66.1
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 4.2e-78 295.0 233 64.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 4.2e-78 295.0 230 65.7
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.5e-78 294.7 232 64.7
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 7.2e-78 294.3 228 64.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 7.2e-78 294.3 229 65.1
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 9.5e-78 293.9 228 64.9
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 9.5e-78 293.9 232 64.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.2e-77 293.5 228 65.4
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.2e-77 293.5 225 67.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.2e-77 293.5 231 65.4
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.6e-77 293.1 228 65.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.1e-77 292.7 228 64.9
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.8e-77 292.4 250 62.8
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.7e-77 291.6 228 64.5
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 4.7e-77 291.6 232 63.4
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 4.7e-77 291.6 232 63.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 4.7e-77 291.6 240 64.6
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.7e-77 291.6 226 65.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 8.0e-77 290.8 249 60.6
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 8.0e-77 290.8 225 65.3
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.0e-76 290.4 235 65.1
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.0e-76 290.4 225 66.2
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.4e-76 290.0 231 63.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.4e-76 290.0 225 65.3
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.4e-76 290.0 230 63.9
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.8e-76 289.7 225 66.2
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.3e-76 289.3 225 64.0
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.3e-76 289.3 232 62.9
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.0e-76 288.9 225 64.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.2e-76 288.1 225 64.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 6.8e-76 287.7 227 63.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 8.9e-76 287.3 225 64.0
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.0e-75 286.2 243 62.1
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.3e-74 283.5 213 70.0
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.9e-74 281.6 225 63.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 6.3e-74 281.2 233 60.9
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.4e-73 280.0 228 65.4
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.8e-73 279.6 225 63.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 2.4e-73 279.3 230 62.6
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.1e-73 278.5 225 61.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.9e-71 271.9 210 68.1
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 5.0e-71 271.6 225 62.2
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.1e-70 270.4 146 92.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.5e-70 270.0 225 61.8
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.3e-70 268.9 266 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 7.3e-70 267.7 233 57.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 7.3e-70 267.7 231 58.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 9.5e-70 267.3 230 60.4
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 8.0e-69 264.2 213 65.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 4.6e-64 248.4 232 54.3
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-62 243.0 228 57.9
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-61 240.4 198 62.1
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 8.9e-60 234.2 204 62.3
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 8.3e-58 227.6 219 56.6
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.2e-57 225.7 221 52.5
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.1e-57 225.3 186 61.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.9e-54 216.5 195 59.0
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.5e-54 216.1 182 62.1
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.6e-54 214.9 221 54.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-51 207.2 219 52.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.4e-51 205.3 171 62.6
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 9.6e-38 161.0 139 58.3
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.2e-37 158.3 139 58.3
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.8e-35 151.8 119 62.2
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 6.2e-29 131.7 228 35.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 6.9e-28 128.3 224 36.6
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.9e-26 122.9 102 61.8
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.6e-24 117.1 100 60.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.3e-23 113.2 58 91.4
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.1e-23 112.1 224 33.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 4.2e-17 92.4 52 78.8
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 6.0e-16 88.6 49 79.6
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-15 87.4 51 76.5
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.9e-15 85.9 49 83.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 3.3e-14 82.8 45 77.8
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.6e-13 80.5 56 69.6
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 6.9e-12 75.1 64 62.5


User provided reference genes

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