Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 4.9e-111 404.4 199 100.0
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 1.1e-83 313.5 188 83.0
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 3.4e-80 302.0 174 83.3
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 1.1e-78 297.0 194 76.8
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 2.5e-78 295.8 191 75.9
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 3.2e-78 295.4 164 84.8
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 4.2e-78 295.0 190 76.8
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 4.2e-78 295.0 190 76.8
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.1e-77 292.7 185 77.3
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 1.0e-76 290.4 198 74.7
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 3.9e-76 288.5 196 75.5
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 8.7e-76 287.3 186 76.3
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 5.7e-75 284.6 179 77.7
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 7.4e-75 284.3 158 85.4
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 1.3e-74 283.5 188 75.0
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 3.7e-74 282.0 175 78.3
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.1e-73 280.4 195 72.8
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 1.8e-73 279.6 173 79.2
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 2.4e-73 279.3 194 74.7
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 2.4e-73 279.3 209 67.5
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 3.1e-73 278.9 196 74.5
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 3.1e-73 278.9 178 76.4
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 5.3e-73 278.1 202 69.3
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 5.3e-73 278.1 195 73.8
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 6.9e-73 277.7 161 81.4
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 9.0e-73 277.3 200 71.0
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 1.2e-72 276.9 188 75.5
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 1.5e-72 276.6 195 72.8
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 7.6e-72 274.2 195 72.8
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 1.0e-71 273.9 188 72.9
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 1.0e-71 273.9 201 71.1
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 2.2e-71 272.7 189 73.0
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 3.8e-71 271.9 194 72.7
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 5.0e-71 271.6 149 86.6
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 5.0e-71 271.6 195 72.3
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 1.1e-70 270.4 194 73.2
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 1.9e-70 269.6 157 83.4
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 1.9e-70 269.6 152 83.6
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 2.5e-70 269.2 158 81.6
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 7.2e-70 267.7 194 72.2
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 7.2e-70 267.7 190 71.6
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 7.2e-70 267.7 195 73.8
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 9.3e-70 267.3 158 78.5
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 9.3e-70 267.3 192 72.4
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 2.1e-69 266.2 154 84.4
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 2.1e-69 266.2 194 68.0
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 2.7e-69 265.8 153 85.0
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 2.7e-69 265.8 147 83.7
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.6e-69 265.4 202 67.8
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 7.9e-69 264.2 157 80.9
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 1.0e-68 263.8 192 68.8
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 1.0e-68 263.8 231 63.2
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 1.3e-68 263.5 195 69.2
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 1.8e-68 263.1 195 69.7
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 3.0e-68 262.3 159 76.1
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 3.9e-68 261.9 194 69.1
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 6.7e-68 261.2 161 78.9
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 6.7e-68 261.2 161 78.9
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 1.5e-67 260.0 172 73.3
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 9.7e-67 257.3 165 76.4
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.3e-66 256.9 224 62.9
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.3e-66 256.9 165 72.1
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 6.3e-66 254.6 164 78.0
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.4e-65 253.4 166 75.9
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 3.1e-65 252.3 176 69.9
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 6.9e-65 251.1 146 80.8
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 9.1e-65 250.8 159 76.7
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.2e-64 250.4 159 76.7
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 1.5e-64 250.0 159 76.7
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 1.5e-64 250.0 165 73.9
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 1.5e-64 250.0 159 76.7
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 1.5e-64 250.0 150 79.3
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 2.0e-64 249.6 150 78.0
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 2.6e-64 249.2 159 78.0
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 2.6e-64 249.2 196 67.3
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 2.6e-64 249.2 150 78.0
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 2.6e-64 249.2 192 67.7
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 7.7e-64 247.7 155 76.8
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.3e-63 246.9 206 65.0
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 1.7e-63 246.5 179 68.2
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 6.5e-63 244.6 167 75.4
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 4.2e-62 241.9 190 66.3
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 4.2e-62 241.9 200 62.5
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 1.6e-61 240.0 182 69.2
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 2.1e-61 239.6 147 78.2
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 6.1e-61 238.0 175 70.9
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.8e-60 236.5 148 75.7
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.5e-59 233.4 150 74.0
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 5.7e-59 231.5 160 70.6
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 1.7e-58 229.9 149 74.5
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 6.3e-58 228.0 171 66.1
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 9.1e-57 224.2 173 69.9
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.2e-55 219.5 175 66.3
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 2.2e-55 219.5 114 86.8
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 5.0e-55 218.4 154 68.8
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 4.7e-53 211.8 121 81.0
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.8e-50 202.6 256 48.4
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 3.7e-50 202.2 102 87.3
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 9.1e-49 197.6 130 73.1
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.7e-47 193.4 121 72.7
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.5e-46 190.3 117 77.8
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 2.1e-45 186.4 162 58.6
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 1.3e-42 177.2 122 66.4
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 8.2e-42 174.5 128 62.5
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.7e-39 166.8 123 70.7
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 4.2e-38 162.2 114 64.9
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 8.0e-37 157.9 81 90.1
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.7e-34 150.2 76 90.8
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 6.3e-34 148.3 121 55.4
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 2.0e-32 143.3 193 49.2
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 7.7e-32 141.4 105 69.5
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 3.8e-31 139.0 75 84.0
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 4.2e-30 135.6 73 83.6
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 3.6e-29 132.5 69 85.5
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 4.7e-29 132.1 108 55.6
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 3.0e-28 129.4 158 51.3
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-23 114.0 58 87.9
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.9e-22 110.2 112 59.8
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 8.3e-18 94.7 177 37.3
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 1.2e-16 90.9 92 47.8
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 2.0e-16 90.1 114 40.4
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 7.8e-16 88.2 64 65.6
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 1.3e-15 87.4 45 84.4
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 1.6e-13 80.5 44 79.5
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 8.9e-12 74.7 64 57.8
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 7.0e-09 65.1 53 45.3


User provided reference genes

Program Settings