Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 5.1e-232 807.4 408 100.0
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 6.7e-131 471.5 370 68.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.1e-128 462.6 361 65.9
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 2.7e-124 449.5 369 63.7
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.9e-124 448.0 398 60.6
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.5e-122 443.0 370 63.5
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.3e-121 440.7 367 64.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.3e-121 440.7 374 63.4
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.4e-120 437.2 367 63.5
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 6.9e-120 434.9 372 60.2
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 9.1e-120 434.5 371 61.7
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 9.1e-120 434.5 367 62.4
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 9.1e-120 434.5 381 62.7
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 3.8e-118 429.1 367 59.1
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.5e-117 426.4 401 56.1
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.2e-117 425.6 393 57.8
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 5.5e-117 425.2 365 60.5
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 7.2e-117 424.9 367 58.6
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.2e-116 424.1 353 65.2
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.2e-116 424.1 361 64.5
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 3.9e-115 419.1 395 57.7
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 5.1e-115 418.7 364 60.2
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 8.8e-115 417.9 395 57.5
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.1e-114 417.5 353 64.0
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.0e-114 416.8 371 59.0
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.0e-114 416.8 395 59.0
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 7.4e-114 414.8 364 59.9
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 9.7e-114 414.5 395 59.2
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.2e-113 413.3 363 59.2
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.8e-113 412.9 362 59.9
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.7e-113 412.5 358 61.2
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 4.8e-113 412.1 365 58.9
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.1e-112 409.5 397 55.4
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.3e-112 408.7 370 57.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 7.0e-112 408.3 365 57.8
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.0e-111 406.8 396 54.5
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 2.6e-111 406.4 370 56.8
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.5e-111 405.6 370 56.5
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.9e-110 402.9 361 59.0
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.5e-110 401.7 355 58.3
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 8.5e-110 401.4 346 62.1
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.4e-109 400.6 393 56.7
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.4e-109 400.6 394 56.9
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.5e-109 399.8 369 57.5
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 7.2e-109 398.3 369 58.0
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 3.6e-108 396.0 355 60.8
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.6e-108 396.0 313 63.9
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.1e-106 391.0 369 57.7
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 3.3e-106 389.4 363 57.6
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.3e-105 387.5 367 57.2
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.3e-105 387.5 365 59.7
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 2.8e-105 386.3 369 56.4
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.8e-104 383.6 355 58.0
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 2.4e-104 383.3 363 56.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.0e-103 380.2 374 54.3
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-103 380.2 366 56.6
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.6e-103 379.8 366 56.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.5e-103 379.4 392 54.1
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.0e-102 377.9 376 54.0
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.9e-102 376.3 377 53.3
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 2.9e-102 376.3 361 55.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.8e-102 375.9 369 53.1
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 6.5e-102 375.2 377 53.3
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 6.5e-102 375.2 371 53.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 8.5e-102 374.8 370 53.8
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.1e-101 374.4 370 53.8
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.9e-101 373.6 376 57.2
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 5.5e-101 372.1 395 52.4
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 5.5e-101 372.1 370 53.2
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 7.2e-101 371.7 371 53.9
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.1e-100 370.2 370 53.2
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.1e-100 370.2 370 53.2
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 8.0e-100 368.2 481 46.8
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.7e-95 351.7 310 64.5
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.3e-94 350.9 311 58.8
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 8.5e-94 348.2 358 54.5
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.1e-92 343.6 222 74.3
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.0e-91 341.3 309 58.3
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.8e-91 340.5 371 53.6
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.8e-91 340.5 281 60.9
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 5.7e-90 335.5 295 58.6
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 7.5e-90 335.1 294 61.6
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.3e-89 334.3 319 56.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.8e-88 330.5 450 43.6
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.2e-87 327.8 379 49.9
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.6e-87 327.4 338 51.8
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.5e-87 326.2 367 50.4
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.5e-87 325.9 367 51.0
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 6.6e-86 322.0 303 55.1
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.0e-84 315.1 315 55.9
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.2e-81 307.0 277 57.4
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 5.9e-79 298.9 391 46.0
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 2.3e-78 297.0 336 48.5
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 6.6e-78 295.4 380 46.3
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.9e-77 293.9 314 50.6
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.0e-74 283.9 335 51.0
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.7e-73 280.8 263 57.0
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 5.4e-72 275.8 221 63.3
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 4.6e-71 272.7 297 51.5
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.7e-70 270.8 377 45.4
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.6e-69 265.8 191 66.0
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 4.7e-68 262.7 228 57.9
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.4e-67 261.2 228 60.1
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 8.3e-65 251.9 370 44.6
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.5e-61 241.1 169 68.0
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-61 240.4 302 47.7
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 5.6e-61 239.2 239 54.4
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.6e-60 237.7 154 72.7
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-59 234.2 165 66.7
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 8.9e-59 231.9 247 51.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 2.0e-58 230.7 221 51.6
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 4.4e-58 229.6 345 40.3
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-54 218.0 185 58.4
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 5.6e-45 186.0 142 62.0
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.6e-44 184.5 211 52.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 3.9e-38 163.3 428 31.8
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 6.6e-38 162.5 172 54.1
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.7e-38 162.2 133 61.7
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 3.1e-35 153.7 327 35.8
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.2e-34 151.8 103 69.9
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.8e-34 149.4 325 34.8
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.4e-33 146.0 227 42.7
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.8e-28 129.8 168 48.2
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.1e-27 128.6 220 35.5
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.5e-26 124.8 150 48.7
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.4e-25 119.0 70 85.7
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 8.7e-22 109.0 121 48.8
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.5e-21 108.2 116 52.6
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 4.8e-20 103.2 137 48.9
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-14 85.5 75 60.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-14 85.5 75 60.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.3e-14 84.3 75 58.7
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.0e-14 84.0 81 56.8
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.7e-14 82.4 75 60.0
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 7.4e-13 79.3 59 59.3
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 4.8e-12 76.6 52 71.2
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.1e-11 75.5 123 42.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.4e-10 70.5 118 44.9
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 6.1e-07 59.7 46 65.2
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.0e-06 57.4 44 61.4
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 8.8e-06 55.8 32 75.0


User provided reference genes

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