Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu048151.2 Olea europaea HOM05D002953 ORTHO05D003249 7.0e-34 147.1 99 100.0
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 2.2e-19 99.0 99 72.7
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 9.2e-18 93.6 99 65.7
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.5e-17 91.7 99 49.5
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 2.3e-16 89.0 107 49.5
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.6e-14 82.8 93 47.3
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 2.8e-14 82.0 99 50.5
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 2.8e-14 82.0 99 46.5
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 6.2e-14 80.9 100 46.0
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 8.1e-14 80.5 99 45.5
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.4e-13 79.7 99 44.4
SalBow2G1905 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.8e-13 79.3 99 69.7
SalBow2G2783 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.8e-13 79.3 99 69.7
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 4.0e-13 78.2 99 42.4
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 6.8e-13 77.4 110 40.0
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 1.5e-12 76.3 97 59.8
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 2.0e-12 75.9 97 41.2
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 2.0e-12 75.9 100 42.0
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 2.6e-12 75.5 100 46.0
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 5.8e-12 74.3 98 43.9
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 5.8e-12 74.3 56 62.5
Nitab4.5_0004304g0070 Nicotiana tabacum HOM05D000954 ORTHO05D000822 5.8e-12 74.3 56 62.5
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 1.3e-11 73.2 99 41.4
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 1.7e-11 72.8 100 40.0
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 1.7e-11 72.8 96 41.7
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 1.7e-11 72.8 100 51.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.2e-11 72.4 100 42.0
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 2.9e-11 72.0 99 49.5
AL1G25750 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 2.9e-11 72.0 99 54.5
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 3.7e-11 71.6 98 43.9
Migut.E00059 Erythranthe guttata HOM05D002953 ORTHO05D003249 3.7e-11 71.6 45 73.3
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 3.7e-11 71.6 97 41.2
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 3.7e-11 71.6 97 42.3
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 4.9e-11 71.2 97 38.1
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 4.9e-11 71.2 99 59.6
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 4.9e-11 71.2 97 40.2
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 6.4e-11 70.9 98 40.8
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 6.4e-11 70.9 99 52.5
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 6.4e-11 70.9 99 40.4
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 8.3e-11 70.5 97 41.2
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 1.1e-10 70.1 95 41.1
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 1.1e-10 70.1 97 41.2
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 3.2e-10 68.6 100 39.0
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 3.2e-10 68.6 100 39.0
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 3.2e-10 68.6 97 41.2
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 3.2e-10 68.6 97 40.2
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 3.2e-10 68.6 110 37.3
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 4.1e-10 68.2 100 39.0
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 4.1e-10 68.2 97 40.2
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 5.4e-10 67.8 97 38.1
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 5.4e-10 67.8 97 37.1
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 5.4e-10 67.8 93 41.9
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 7.1e-10 67.4 128 37.5
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 7.1e-10 67.4 97 43.3
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 7.1e-10 67.4 97 39.2
Carub.0001s1362 Capsella rubella HOM05D002953 ORTHO05D003249 9.2e-10 67.0 99 51.5
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 9.2e-10 67.0 98 39.8
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 9.2e-10 67.0 97 37.1
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 9.2e-10 67.0 99 37.4
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 9.2e-10 67.0 98 38.8
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 1.2e-09 66.6 93 40.9
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 1.6e-09 66.2 100 36.0
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 1.6e-09 66.2 100 36.0
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 1.6e-09 66.2 100 36.0
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.6e-09 66.2 99 37.4
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 2.1e-09 65.9 100 39.0
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 2.7e-09 65.5 101 41.6
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 2.7e-09 65.5 95 38.9
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 2.7e-09 65.5 97 38.1
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.7e-09 65.5 97 36.1
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 2.7e-09 65.5 97 36.1
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 2.7e-09 65.5 96 38.5
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 2.7e-09 65.5 96 38.5
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 3.5e-09 65.1 103 37.9
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 3.5e-09 65.1 99 56.6
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 4.6e-09 64.7 99 36.4
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 4.6e-09 64.7 98 38.8
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 4.6e-09 64.7 128 35.9
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 4.6e-09 64.7 99 37.4
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 6.0e-09 64.3 98 37.8
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 6.0e-09 64.3 97 50.5
BcaB03g13124 Brassica carinata HOM05D002953 ORTHO05D003249 7.8e-09 63.9 100 53.0
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 7.8e-09 63.9 98 38.8
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 7.8e-09 63.9 96 38.5
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 7.8e-09 63.9 97 37.1
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 1.0e-08 63.5 100 38.0
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 1.0e-08 63.5 100 39.0
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 1.3e-08 63.2 99 36.4
SGA_v2.0_scaffold36G14435 Striga asiatica HOM05D002953 ORTHO05D003249 1.3e-08 63.2 41 73.2
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 1.7e-08 62.8 98 34.7
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 2.3e-08 62.4 56 55.4
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 2.3e-08 62.4 92 38.0
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 2.3e-08 62.4 98 35.7
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 2.3e-08 62.4 98 52.0
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 2.3e-08 62.4 90 43.3
A06p09930 Brassica napus HOM05D002953 ORTHO05D003249 3.0e-08 62.0 94 59.6
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 3.0e-08 62.0 96 37.5
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 3.0e-08 62.0 96 38.5
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 3.9e-08 61.6 96 42.7
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 3.9e-08 61.6 96 42.7
arahy.Tifrunner.gnm1.ann1.FH6P3F Arachis hypogaea HOM05D002953 ORTHO05D003249 5.1e-08 61.2 97 49.5
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 5.1e-08 61.2 98 35.7
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 6.6e-08 60.8 99 36.4
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 6.6e-08 60.8 97 36.1
BraA06t24181Z Brassica rapa HOM05D002953 ORTHO05D003249 8.6e-08 60.5 94 57.4
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 8.6e-08 60.5 100 35.0
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 8.6e-08 60.5 100 35.0
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 8.6e-08 60.5 97 36.1
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 8.6e-08 60.5 97 36.1
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.1e-07 60.1 96 36.5
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 1.1e-07 60.1 98 33.7
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 1.1e-07 60.1 98 38.8
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.1e-07 60.1 100 35.0
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 1.1e-07 60.1 96 38.5
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 1.1e-07 60.1 52 55.8
CDE05G2801 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 1.5e-07 59.7 99 44.4
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 1.5e-07 59.7 96 34.4
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 1.5e-07 59.7 95 36.8
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 1.5e-07 59.7 97 35.1
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 1.5e-07 59.7 96 36.5
Migut.L01214 Erythranthe guttata HOM05D002953 ORTHO05D003249 1.9e-07 59.3 41 73.2
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.9e-07 59.3 97 37.1
C06p40600 Brassica napus HOM05D002953 ORTHO05D003249 2.5e-07 58.9 96 37.5
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 2.5e-07 58.9 99 36.4
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 2.5e-07 58.9 97 32.0
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.3e-07 58.5 99 35.4
Haze_11930 Corylus avellana HOM05D002953 ORTHO05D003249 3.3e-07 58.5 97 46.4
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 3.3e-07 58.5 99 35.4
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 4.3e-07 58.2 101 36.6
Eucgr.B03175 Eucalyptus grandis HOM05D002953 ORTHO05D003249 4.3e-07 58.2 55 49.1
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 4.3e-07 58.2 92 37.0
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 4.3e-07 58.2 99 34.3
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 4.3e-07 58.2 97 34.0
THA.LOC104822899 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 5.6e-07 57.8 95 41.1
Carub.0002s1592 Capsella rubella HOM05D002953 ORTHO05D003249 7.3e-07 57.4 96 37.5
Ah.02g126500 Amaranthus hybridus HOM05D002953 ORTHO05D003249 9.5e-07 57.0 58 51.7
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 9.5e-07 57.0 96 34.4
arahy.Tifrunner.gnm1.ann1.GA8N54 Arachis hypogaea HOM05D002953 ORTHO05D003249 9.5e-07 57.0 97 46.4
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 9.5e-07 57.0 96 34.4
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 9.5e-07 57.0 96 33.3
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 9.5e-07 57.0 98 33.7
GSVIVG01012183001 Vitis vinifera HOM05D002953 ORTHO05D003249 9.5e-07 57.0 44 61.4
Os10g0325400 Oryza sativa ssp. japonica HOM05D002953 ORTHO05D003249 1.2e-06 56.6 56 51.8
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 1.6e-06 56.2 96 35.4
Os03g0211500 Oryza sativa ssp. japonica HOM05D002953 ORTHO05D003249 1.6e-06 56.2 99 35.4
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 1.6e-06 56.2 99 37.4
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 1.6e-06 56.2 97 33.0
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 2.1e-06 55.8 96 35.4
Sp5g24380 Schrenkiella parvula HOM05D002953 ORTHO05D003249 2.1e-06 55.8 95 36.8
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 2.1e-06 55.8 99 33.3
HPP92_017524 Vanilla planifolia HOM05D002953 ORTHO05D003249 2.8e-06 55.5 55 47.3
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 3.6e-06 55.1 98 30.6
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 4.7e-06 54.7 53 52.8
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 4.7e-06 54.7 98 33.7
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 6.2e-06 54.3 98 30.6
BolC6t39372H Brassica oleracea HOM05D002953 ORTHO05D003249 8.1e-06 53.9 96 35.4
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 8.1e-06 53.9 97 32.0
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 8.1e-06 53.9 95 34.7
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 8.1e-06 53.9 99 32.3


User provided reference genes

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