Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 2.8e-141 505.4 276 100.0
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 2.8e-141 505.4 276 100.0
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 6.0e-59 231.9 308 56.8
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.7e-58 228.0 316 49.4
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.5e-57 227.3 315 55.2
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.8e-56 222.2 316 53.5
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 4.0e-55 219.2 298 55.0
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.3e-53 214.2 313 53.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.2e-53 213.4 317 52.4
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.2e-52 209.5 318 50.9
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.2e-52 209.5 318 50.9
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 5.5e-52 208.8 321 50.2
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.5e-51 206.1 322 49.7
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 7.9e-51 204.9 322 50.3
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-50 204.5 318 50.6
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.0e-50 204.5 317 51.1
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.8e-50 203.8 320 47.8
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 3.9e-50 202.6 284 58.1
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.5e-49 200.7 321 45.8
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.5e-49 200.7 284 50.4
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 3.3e-49 199.5 323 44.6
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.4e-49 198.4 314 46.5
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.8e-48 196.4 285 53.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 6.3e-48 195.3 270 50.4
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 6.3e-48 195.3 288 51.7
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.4e-47 193.4 304 52.6
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.2e-46 191.0 323 49.5
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 2.6e-46 189.9 331 48.0
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 7.7e-46 188.3 314 51.0
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 7.7e-46 188.3 323 49.5
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-45 187.6 284 54.2
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.7e-45 187.2 316 48.7
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 6.5e-45 185.3 310 48.4
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.1e-44 184.5 325 46.8
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.4e-44 184.1 319 48.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.9e-44 183.7 259 47.9
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.2e-44 183.0 323 47.7
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 4.2e-44 182.6 316 47.8
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.2e-44 181.8 284 52.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 9.4e-44 181.4 287 52.6
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.1e-43 180.3 289 47.1
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.0e-42 177.9 327 46.8
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.8e-42 177.2 287 44.6
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.8e-42 177.2 300 51.0
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 5.1e-42 175.6 345 45.5
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.5e-41 173.3 285 49.8
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.5e-41 173.3 285 49.8
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 3.3e-41 172.9 292 50.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.7e-40 170.6 321 44.2
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.4e-39 166.8 277 52.0
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.3e-39 165.6 265 45.7
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 2.6e-38 163.3 333 42.9
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 3.4e-38 162.9 305 48.2
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.9e-38 162.2 287 47.4
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 2.9e-37 159.8 331 41.4
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.4e-36 157.5 323 45.2
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.9e-36 157.1 324 46.3
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.9e-36 157.1 323 46.1
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.9e-36 157.1 321 43.9
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.5e-36 155.6 285 47.0
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.5e-36 155.6 303 48.8
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.2e-35 154.5 283 48.1
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 2.1e-35 153.7 309 44.7
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 3.6e-35 152.9 330 38.2
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 6.1e-35 152.1 352 42.3
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.3e-34 150.2 295 47.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 6.7e-34 148.7 297 43.1
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 1.5e-33 147.5 287 43.6
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 3.3e-33 146.4 332 38.6
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 4.4e-33 146.0 352 41.5
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-32 144.4 322 40.4
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.2e-32 143.7 323 40.2
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.1e-31 141.4 338 42.0
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 3.1e-31 139.8 320 43.4
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.5e-30 137.5 325 37.5
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 2.6e-30 136.7 316 37.0
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.9e-30 135.6 213 51.6
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 7.7e-30 135.2 338 45.0
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.0e-29 134.8 323 41.8
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.2e-29 133.7 330 38.5
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.9e-29 133.3 323 42.4
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 3.8e-29 132.9 190 49.5
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 3.8e-29 132.9 184 57.1
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 3.2e-28 129.8 338 36.4
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 7.2e-28 128.6 328 36.3
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 9.4e-28 128.3 321 39.9
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.0e-27 125.2 316 43.7
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 8.0e-27 125.2 309 39.2
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.4e-26 124.4 332 36.4
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.4e-26 124.4 328 40.2
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 6.7e-26 122.1 318 42.8
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.7e-26 122.1 318 42.8
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.8e-26 121.7 319 42.3
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.0e-25 120.6 227 40.1
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.0e-25 120.6 279 38.7
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.6e-25 120.2 174 58.0
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.6e-25 120.2 316 35.8
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.4e-25 119.4 317 42.6
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 4.4e-25 119.4 311 40.8
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 7.4e-25 118.6 299 36.5
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 9.7e-25 118.2 299 43.5
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 2.8e-24 116.7 244 45.1
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.1e-23 114.8 354 37.9
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.1e-23 114.8 330 37.3
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 4.1e-23 112.8 357 37.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 7.0e-23 112.1 283 42.8
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.1e-23 111.7 287 39.0
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.3e-21 107.8 279 37.3
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.8e-21 106.3 299 38.5
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.8e-21 106.3 299 38.5
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.8e-21 106.3 299 38.5
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 6.5e-21 105.5 324 34.6
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 8.5e-21 105.1 303 41.6
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.1e-20 104.8 322 38.8
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 9.4e-20 101.7 323 33.4
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.2e-19 101.3 273 38.1
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 3.6e-19 99.8 307 35.5
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 6.1e-19 99.0 295 38.3
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.0e-17 94.0 298 38.9
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.3e-17 93.2 287 40.8
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.1e-15 88.2 301 30.9
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 9.1e-15 85.1 319 29.8
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.5e-14 83.2 309 29.8
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.7e-13 80.9 280 30.0
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 2.2e-13 80.5 297 32.7
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 5.0e-13 79.3 291 35.1
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.5e-12 77.8 292 29.5
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.2e-11 74.7 281 37.7
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.6e-11 74.3 308 29.9
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-11 74.3 314 29.9
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.6e-11 74.3 308 29.9
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 2.1e-11 73.9 308 29.9
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.1e-11 73.9 310 29.7
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.1e-11 73.9 314 29.9
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 3.6e-11 73.2 313 29.4
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 4.7e-11 72.8 311 29.6
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 6.1e-11 72.4 308 31.2
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 8.0e-11 72.0 318 32.1
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.4e-10 71.2 302 28.5
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.8e-10 70.9 302 29.1
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.2e-09 68.2 308 28.9
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 4.4e-09 66.2 368 29.9
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 9.8e-09 65.1 304 32.6
unitig_22.g5564 Utricularia gibba HOM05D004533 ORTHO05D005347 1.7e-08 64.3 285 29.1
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.8e-07 60.8 327 34.9
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 5.4e-07 59.3 297 33.0
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 7.0e-07 58.9 92 44.6
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 3.5e-06 56.6 55 56.4


User provided reference genes

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