Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.6e-231 805.8 429 100.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 3.6e-159 565.5 444 70.9
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 5.2e-118 428.7 443 56.2
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 2.1e-98 363.6 443 51.5
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.4e-94 350.1 394 53.3
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 4.9e-92 342.4 427 48.5
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.2e-91 339.7 429 46.9
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.2e-85 321.2 424 47.9
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 4.9e-84 315.8 462 44.2
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 4.2e-83 312.8 431 44.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.3e-79 301.2 425 42.6
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 2.1e-79 300.4 414 44.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 8.2e-79 298.5 408 43.6
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.4e-78 297.7 421 43.0
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.8e-78 297.4 429 45.7
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 3.1e-78 296.6 411 43.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.9e-78 295.4 411 42.8
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.5e-77 294.3 410 42.7
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 3.4e-77 293.1 397 45.1
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 5.8e-77 292.4 420 46.4
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 2.2e-76 290.4 395 47.1
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.2e-76 290.4 402 43.0
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.9e-76 290.0 397 46.1
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.1e-75 288.1 421 46.1
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.4e-75 287.7 435 43.2
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 4.2e-75 286.2 419 42.7
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 7.1e-75 285.4 423 44.7
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.1e-74 283.9 424 42.0
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.6e-74 282.7 425 44.5
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 6.1e-74 282.3 439 40.1
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 7.9e-74 282.0 337 49.6
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.1e-72 278.1 402 43.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.9e-72 277.3 370 45.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.9e-72 277.3 370 45.4
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.5e-72 276.9 409 42.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 3.3e-72 276.6 446 39.5
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.3e-72 276.2 425 41.4
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.3e-71 274.6 396 43.2
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.2e-71 273.9 414 43.7
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.2e-71 273.9 397 44.6
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.2e-71 273.9 429 40.8
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 2.8e-71 273.5 339 48.7
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.7e-71 273.1 420 42.4
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 8.2e-71 271.9 421 44.7
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 8.2e-71 271.9 426 40.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.4e-70 271.2 423 45.4
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.8e-70 270.8 416 41.1
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.1e-70 270.0 387 41.9
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.1e-70 270.0 387 41.9
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.2e-69 268.1 398 46.7
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.5e-69 267.7 385 45.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.4e-69 266.5 421 42.5
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 4.5e-69 266.2 403 43.9
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 4.5e-69 266.2 403 43.9
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.7e-68 264.2 438 38.6
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.2e-68 263.8 430 42.1
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.9e-68 263.5 409 44.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 3.8e-68 263.1 406 41.6
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 3.8e-68 263.1 448 42.9
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.5e-68 261.9 409 41.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.1e-67 261.5 390 41.3
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.1e-67 261.5 407 42.3
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.4e-67 261.2 462 38.7
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.4e-67 261.2 401 42.9
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.5e-67 260.4 502 37.8
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 3.2e-67 260.0 416 41.8
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 5.5e-67 259.2 416 40.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 5.5e-67 259.2 429 40.8
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 9.4e-67 258.5 417 40.3
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 9.4e-67 258.5 417 40.3
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.2e-66 258.1 443 36.8
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.1e-66 257.3 391 40.7
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 4.6e-66 256.1 431 39.4
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 4.6e-66 256.1 436 38.5
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.4e-65 254.6 392 42.6
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.8e-65 254.2 416 40.4
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.3e-65 253.8 403 41.7
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.1e-64 251.5 416 39.4
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.5e-64 251.1 441 39.2
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 3.3e-64 250.0 311 47.9
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 4.3e-64 249.6 315 49.8
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.2e-63 247.3 401 40.4
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.8e-63 246.1 466 37.8
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.1e-62 245.0 422 40.3
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-62 244.6 378 42.3
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.3e-62 242.7 378 42.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 6.9e-62 242.3 378 42.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.2e-61 241.5 378 42.1
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-61 241.1 447 36.9
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.5e-61 241.1 406 41.1
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.0e-61 240.7 444 37.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 2.0e-61 240.7 433 38.1
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 4.5e-61 239.6 378 42.3
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 5.9e-61 239.2 393 42.0
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.0e-60 238.4 311 48.6
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 3.6e-58 229.9 380 41.8
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 2.8e-55 220.3 485 34.8
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 7.0e-54 215.7 386 41.7
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.5e-53 213.4 371 40.4
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 5.9e-53 212.6 370 38.9
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.3e-52 211.5 428 36.4
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.7e-52 211.1 369 42.3
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.9e-52 210.3 376 41.2
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.5e-51 207.2 375 38.9
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.7e-50 203.8 385 40.3
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 6.1e-50 202.6 390 36.7
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 6.7e-49 199.1 396 36.6
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.1e-48 198.4 339 40.7
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 4.4e-48 196.4 403 41.7
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.3e-47 194.9 377 39.8
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 3.7e-47 193.4 346 38.2
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 8.2e-47 192.2 382 35.3
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.5e-45 186.8 310 39.0
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.1e-42 177.6 345 35.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 5.2e-41 172.9 395 34.7
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.3e-39 166.0 351 39.3
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 8.3e-39 165.6 383 34.5
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.5e-37 160.2 387 32.0
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.8e-36 156.8 347 34.6
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 5.0e-36 156.4 406 34.5
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 5.4e-30 136.3 343 31.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 7.0e-30 136.0 134 48.5
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.2e-29 135.2 644 25.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.5e-24 118.2 353 30.6
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.7e-23 114.8 514 23.9
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.9e-20 104.0 238 37.8
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 3.4e-16 90.5 515 22.5
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 2.2e-15 87.8 509 22.8
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 6.4e-15 86.3 76 55.3
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.7e-12 78.2 116 40.5
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 6.6e-12 76.3 401 24.4
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.1e-11 75.5 117 35.9
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.9e-11 74.7 139 33.8
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.3e-11 72.8 123 38.2
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 7.3e-11 72.8 142 35.9
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.6e-10 71.6 108 38.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.1e-09 68.9 122 34.4
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 3.1e-09 67.4 117 41.0
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.5e-08 65.1 172 33.7
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.2e-07 61.2 72 44.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 8.3e-07 59.3 51 49.0
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-06 58.9 173 30.1
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 1.4e-06 58.5 99 39.4
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.4e-06 58.5 126 34.1
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 4.1e-06 57.0 82 40.2
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 4.1e-06 57.0 106 35.8
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 5.4e-06 56.6 106 36.8


User provided reference genes

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