Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 7.3e-181 637.1 325 100.0
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 3.8e-121 438.7 328 70.1
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 9.8e-117 424.1 328 70.1
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 2.8e-116 422.5 328 68.0
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.1e-115 420.6 369 64.5
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.5e-114 415.6 326 66.9
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 7.7e-114 414.5 326 66.6
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 4.7e-111 405.2 328 66.2
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 6.1e-111 404.8 328 65.9
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.2e-109 400.6 326 65.3
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 3.4e-109 399.1 329 68.4
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 4.9e-108 395.2 328 64.9
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.6e-106 390.2 330 62.1
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 4.5e-106 388.7 327 64.8
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.7e-105 386.7 341 62.8
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.3e-105 386.3 328 64.6
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 5.0e-105 385.2 330 64.5
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.1e-104 384.0 330 63.0
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 1.1e-104 384.0 329 65.0
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 4.3e-104 382.1 331 62.2
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 5.6e-104 381.7 330 63.0
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 1.8e-102 376.7 327 62.1
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 3.4e-101 372.5 318 64.8
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 4.4e-101 372.1 329 61.1
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.3e-100 370.5 326 62.3
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 1.3e-100 370.5 329 61.7
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 3.7e-100 369.0 327 61.8
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 4.9e-100 368.6 323 61.0
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 1.8e-99 366.7 326 60.7
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.8e-99 366.7 326 60.7
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 2.4e-99 366.3 323 60.4
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.0e-99 364.8 330 61.5
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 9.2e-99 364.4 331 61.0
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 9.2e-99 364.4 330 60.0
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 9.2e-99 364.4 328 60.7
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.2e-98 364.0 318 62.9
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.6e-98 363.6 327 59.3
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 1.6e-98 363.6 321 61.1
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 2.7e-98 362.8 330 60.3
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 4.6e-98 362.1 330 59.4
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.9e-98 361.7 330 59.7
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 5.9e-98 361.7 326 59.5
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 1.0e-97 360.9 328 61.9
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.0e-97 360.9 326 60.4
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.3e-97 360.5 330 59.4
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.3e-97 360.5 327 61.2
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 2.3e-97 359.8 323 61.0
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 3.9e-97 359.0 331 59.8
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 3.9e-97 359.0 323 60.7
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 5.0e-97 358.6 330 59.1
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 5.0e-97 358.6 336 57.7
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 3.3e-96 355.9 323 59.1
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 5.6e-96 355.1 323 59.1
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 5.6e-96 355.1 333 60.1
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 7.3e-96 354.8 328 61.6
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 7.3e-96 354.8 308 64.6
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.2e-95 354.0 323 58.8
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 1.6e-95 353.6 342 58.2
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 2.8e-95 352.8 323 57.9
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 2.8e-95 352.8 381 53.3
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.8e-95 352.8 326 61.7
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 4.7e-95 352.1 343 58.3
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.4e-94 350.5 330 58.5
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.5e-93 347.1 327 61.2
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.0e-93 346.7 326 58.6
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 4.4e-93 345.5 318 59.7
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 9.8e-93 344.4 328 56.1
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 2.9e-92 342.8 331 57.4
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 3.2e-91 339.3 330 57.6
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.2e-90 337.4 328 57.6
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.6e-90 337.0 326 56.7
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 7.8e-90 334.7 328 55.8
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.0e-89 334.3 330 56.7
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.7e-89 333.6 326 58.3
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 3.9e-89 332.4 326 55.8
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 6.6e-89 331.6 326 58.0
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 2.5e-88 329.7 328 57.3
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 9.5e-88 327.8 335 58.2
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 3.6e-87 325.9 326 56.4
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 4.7e-87 325.5 326 56.1
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 4.7e-87 325.5 262 66.4
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 6.2e-87 325.1 326 55.8
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 6.2e-87 325.1 326 55.8
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 6.2e-87 325.1 326 55.8
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 4.0e-86 322.4 380 50.8
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.2e-85 320.9 329 54.7
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.4e-85 319.3 331 54.4
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.3e-84 317.4 326 55.5
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.7e-84 317.0 330 53.9
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.7e-84 317.0 330 53.9
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 4.9e-84 315.5 327 53.5
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 8.3e-84 314.7 383 49.6
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 2.4e-83 313.2 320 53.8
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 7.1e-83 311.6 350 52.0
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 9.2e-83 311.2 305 57.0
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 9.2e-83 311.2 328 54.9
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 2.1e-82 310.1 329 52.9
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 6.0e-82 308.5 330 52.7
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.0e-82 308.5 328 54.3
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 6.6e-81 305.1 321 53.9
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 3.3e-80 302.8 314 55.1
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.1e-79 300.1 274 59.5
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.9e-75 287.0 315 54.3
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 5.4e-75 285.4 324 48.8
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 7.3e-72 275.0 310 52.3
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 3.6e-71 272.7 319 50.5
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 6.2e-71 271.9 326 51.2
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 8.1e-71 271.6 211 69.2
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.6e-69 266.5 363 48.5
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.1e-66 256.9 271 53.5
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 2.7e-66 256.5 318 50.0
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 6.6e-65 251.9 327 47.4
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 9.0e-62 241.5 330 45.8
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 1.5e-56 224.2 322 42.5
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 7.4e-56 221.9 323 44.0
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.6e-55 220.7 267 45.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 2.0e-53 213.8 178 62.9
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.9e-48 197.2 330 37.6
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 7.4e-40 168.7 109 82.6
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 3.2e-35 153.3 337 33.2
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.6e-34 149.4 282 38.3
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.0e-33 148.3 105 75.2
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 2.3e-33 147.1 187 44.9
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 3.0e-33 146.7 183 45.9
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 3.0e-33 146.7 110 70.0
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 5.9e-29 132.5 136 58.1
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 3.1e-22 110.2 256 32.4
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.2e-20 104.0 98 54.1
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 1.2e-18 98.2 52 94.2
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 1.4e-17 94.7 114 45.6
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 6.3e-15 85.9 338 28.1
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 8.2e-15 85.5 73 54.8
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 5.3e-14 82.8 92 48.9
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 1.1e-11 75.1 44 86.4
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 1.1e-11 75.1 44 86.4
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 1.1e-11 75.1 44 86.4
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.9e-11 74.3 56 64.3
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 3.2e-11 73.6 44 84.1
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 4.2e-11 73.2 51 72.5
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 5.5e-11 72.8 54 72.2
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.1e-10 70.9 51 70.6
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.4e-09 68.2 104 41.3
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 3.3e-08 63.5 84 42.9
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 5.7e-08 62.8 38 76.3


User provided reference genes

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