Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 6.7e-63 243.8 120 100.0
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 1.2e-32 143.3 121 61.2
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 6.1e-32 141.0 124 59.7
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.1e-30 136.7 123 59.3
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.9e-26 122.1 138 49.3
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-24 116.7 119 56.3
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-24 116.7 119 56.3
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 2.7e-24 115.5 120 51.7
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 4.7e-24 114.8 120 52.5
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 8.0e-24 114.0 103 62.1
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 5.2e-23 111.3 122 50.8
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-22 110.2 124 52.4
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 2.6e-22 109.0 120 50.8
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.6e-22 109.0 120 53.3
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.6e-22 109.0 120 53.3
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 7.5e-22 107.5 122 52.5
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.8e-21 105.5 121 48.8
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.1e-20 103.6 124 49.2
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 1.1e-20 103.6 121 47.9
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 1.8e-20 102.8 121 52.1
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 3.1e-20 102.1 117 50.4
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 4.1e-20 101.7 122 50.8
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 9.1e-20 100.5 123 47.2
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.6e-19 99.8 123 46.3
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.0e-19 99.4 123 46.3
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 3.5e-19 98.6 124 47.6
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 5.9e-19 97.8 120 45.0
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 7.7e-19 97.4 121 47.1
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.3e-18 96.7 122 48.4
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-18 96.7 114 49.1
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 2.2e-18 95.9 120 47.5
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.9e-18 95.5 116 46.6
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.8e-18 95.1 120 49.2
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 5.0e-18 94.7 119 46.2
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 5.0e-18 94.7 123 48.0
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.5e-18 94.4 123 45.5
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 6.5e-18 94.4 124 47.6
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 8.5e-18 94.0 116 45.7
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.1e-17 93.6 116 47.4
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.1e-17 93.6 119 47.9
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.5e-17 93.2 116 45.7
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.2e-17 92.0 119 47.9
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 3.2e-17 92.0 116 44.0
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 4.2e-17 91.7 121 44.6
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 7.2e-17 90.9 119 47.1
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.4e-17 90.5 118 44.1
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 9.4e-17 90.5 116 44.8
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.1e-16 89.4 119 43.7
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.1e-16 89.4 119 43.7
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 4.7e-16 88.2 120 41.7
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 6.1e-16 87.8 120 45.0
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 1.4e-15 86.7 123 45.5
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 2.3e-15 85.9 118 44.9
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 4.0e-15 85.1 114 46.5
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.2e-15 84.7 123 39.8
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 5.2e-15 84.7 119 41.2
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.4e-14 82.0 110 42.7
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.4e-14 82.0 125 45.6
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.4e-14 81.6 123 41.5
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 5.7e-14 81.3 127 42.5
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 9.8e-14 80.5 130 45.4
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 9.8e-14 80.5 121 39.7
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 1.3e-13 80.1 120 40.8
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 3.7e-13 78.6 118 39.8
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 1.8e-12 76.3 131 38.9
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 1.8e-12 76.3 129 41.9
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 2.4e-12 75.9 123 42.3
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 2.4e-12 75.9 123 42.3
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 3.1e-12 75.5 115 39.1
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 4.1e-12 75.1 130 40.8
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 4.1e-12 75.1 122 38.5
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 4.1e-12 75.1 119 34.5
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.4e-12 74.7 122 41.8
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 5.4e-12 74.7 129 41.1
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 7.0e-12 74.3 124 37.9
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 7.0e-12 74.3 124 36.3
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 9.1e-12 73.9 124 41.1
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 9.1e-12 73.9 124 41.1
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 9.1e-12 73.9 119 34.5
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.1e-12 73.9 116 32.8
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 9.1e-12 73.9 122 38.5
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 2.7e-11 72.4 122 38.5
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 3.5e-11 72.0 122 40.2
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 3.5e-11 72.0 123 39.8
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 3.5e-11 72.0 120 38.3
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.5e-11 71.6 123 35.0
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 5.9e-11 71.2 128 38.3
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 5.9e-11 71.2 128 38.3
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 5.9e-11 71.2 120 38.3
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 7.7e-11 70.9 126 40.5
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.0e-10 70.5 123 35.8
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 1.7e-10 69.7 128 39.8
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 2.3e-10 69.3 128 39.8
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.8e-10 68.6 119 36.1
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.1e-09 67.0 114 36.8
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 2.5e-09 65.9 121 33.1
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 3.3e-09 65.5 129 38.0
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 3.3e-09 65.5 118 33.9
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 3.3e-09 65.5 121 37.2
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 3.3e-09 65.5 126 34.9
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 4.2e-09 65.1 119 31.9
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 5.5e-09 64.7 124 37.1
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.2e-09 64.3 127 33.1
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.5e-09 63.9 127 33.1
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 9.5e-09 63.9 124 39.5
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 9.5e-09 63.9 115 35.7
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.2e-08 63.5 118 37.3
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.2e-08 63.5 124 36.3
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.2e-08 63.5 114 40.4
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.2e-08 63.5 125 35.2
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.2e-08 63.5 125 37.6
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 1.2e-08 63.5 128 37.5
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 1.2e-08 63.5 129 38.0
Duzib133G0282 Durio zibethinus HOM05D003529 ORTHO05D004106 1.6e-08 63.2 121 31.4
Duzib211G0236 Durio zibethinus HOM05D003529 ORTHO05D004106 1.6e-08 63.2 113 36.3
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.6e-08 63.2 127 33.1
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-08 63.2 127 33.1
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-08 63.2 127 33.1
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.1e-08 62.8 122 36.1
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 3.6e-08 62.0 125 34.4
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.6e-08 62.0 127 33.1
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 6.1e-08 61.2 118 35.6
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 8.0e-08 60.8 123 37.4
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 8.0e-08 60.8 87 43.7
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 1.4e-07 60.1 117 34.2
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.4e-07 60.1 122 32.8
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.8e-07 59.7 127 32.3
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-07 59.7 127 32.3
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-07 59.7 127 31.5
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 1.8e-07 59.7 119 35.3
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 2.3e-07 59.3 126 37.3
Duzib138G1135 Durio zibethinus HOM05D003529 ORTHO05D004106 3.0e-07 58.9 113 34.5
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.0e-07 58.9 127 32.3
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 3.0e-07 58.9 128 35.9
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 4.0e-07 58.5 129 31.8
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 5.2e-07 58.2 118 35.6
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.2e-07 58.2 127 31.5
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 6.8e-07 57.8 126 35.7
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 6.8e-07 57.8 123 30.9
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 8.9e-07 57.4 119 36.1
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.5e-06 56.6 114 28.9
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 1.5e-06 56.6 114 34.2
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 1.5e-06 56.6 116 34.5
DCAR_025900 Daucus carota HOM05D004062 ORTHO05D004417 2.0e-06 56.2 97 37.1
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 2.6e-06 55.8 127 30.7
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 4.4e-06 55.1 86 40.7
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 7.5e-06 54.3 127 35.4
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.5e-06 54.3 124 30.6
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 9.8e-06 53.9 124 34.7
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 9.8e-06 53.9 124 34.7
Thecc.01G308200 Theobroma cacao HOM05D003529 ORTHO05D004106 9.8e-06 53.9 114 32.5


User provided reference genes

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