Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 3.2e-209 731.5 367 100.0
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 8.9e-143 510.8 373 71.0
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 8.9e-143 510.8 373 71.0
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.1e-140 503.8 375 70.7
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 7.3e-137 491.1 367 68.9
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 4.8e-136 488.4 375 69.6
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.8e-135 486.5 376 68.4
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 1.2e-134 483.8 375 67.5
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.5e-134 483.4 375 67.5
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.3e-133 480.3 375 66.9
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 8.4e-133 477.6 368 67.1
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 8.4e-133 477.6 374 66.0
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.4e-132 476.9 375 66.9
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.4e-132 476.9 368 67.7
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 2.4e-132 476.1 375 66.4
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 3.2e-132 475.7 376 66.8
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 5.4e-132 474.9 367 66.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.5e-131 472.2 370 66.8
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 2.3e-130 469.5 370 66.5
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 2.3e-130 469.5 374 65.8
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 3.0e-130 469.2 376 65.2
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 5.1e-130 468.4 367 65.7
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 6.7e-130 468.0 375 64.8
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.5e-129 466.8 376 64.6
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.3e-128 463.8 374 65.5
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.6e-128 463.4 376 65.7
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.6e-128 463.4 374 65.2
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 2.1e-128 463.0 376 63.3
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 3.7e-128 462.2 374 63.9
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 3.7e-128 462.2 369 65.0
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 4.8e-128 461.8 378 64.3
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 4.8e-128 461.8 368 66.0
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 4.8e-128 461.8 376 64.1
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 4.8e-128 461.8 369 65.9
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 6.2e-128 461.5 371 66.3
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 8.1e-128 461.1 374 63.6
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.4e-127 460.3 375 64.8
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 1.4e-127 460.3 375 65.9
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 2.4e-127 459.5 377 65.5
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 4.0e-127 458.8 376 64.9
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 6.9e-127 458.0 370 64.6
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 9.0e-127 457.6 369 62.9
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 9.0e-127 457.6 371 65.8
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 2.6e-126 456.1 373 61.4
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.4e-126 455.7 378 63.2
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 5.8e-126 454.9 380 62.9
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 5.8e-126 454.9 377 64.2
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 9.9e-126 454.1 376 63.8
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 1.7e-125 453.4 376 63.0
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 2.9e-125 452.6 378 64.3
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.9e-125 452.6 369 63.1
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 3.8e-125 452.2 366 63.9
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 3.8e-125 452.2 367 64.9
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 4.2e-124 448.7 375 63.2
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.2e-123 447.2 382 62.8
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.2e-123 447.2 377 63.1
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 7.9e-123 444.5 377 63.4
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 7.9e-123 444.5 382 63.1
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 1.8e-122 443.4 346 67.1
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 3.0e-122 442.6 383 63.2
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 3.0e-122 442.6 374 61.2
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 8.7e-122 441.0 378 61.9
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.5e-121 440.3 375 62.7
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 1.9e-121 439.9 376 63.3
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 2.5e-121 439.5 417 59.2
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 3.3e-121 439.1 376 62.0
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 5.6e-121 438.3 368 61.7
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 5.6e-121 438.3 375 62.9
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.3e-120 437.2 405 57.0
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.3e-120 437.2 370 62.2
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 2.1e-120 436.4 377 62.1
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 4.8e-120 435.3 379 62.0
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 4.8e-120 435.3 368 63.9
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 6.2e-120 434.9 377 61.5
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 8.2e-120 434.5 382 61.5
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.1e-119 434.1 376 60.1
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.4e-119 433.7 382 61.3
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.4e-119 433.0 382 61.0
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 4.0e-119 432.2 382 61.0
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.2e-118 430.6 362 62.4
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 2.6e-118 429.5 370 61.1
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 7.6e-118 427.9 384 59.6
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 2.2e-117 426.4 369 60.4
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 3.8e-117 425.6 371 60.9
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 2.5e-116 422.9 382 61.0
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 5.5e-116 421.8 404 58.2
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 5.5e-116 421.8 378 61.1
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.6e-115 420.2 374 59.9
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 7.9e-115 417.9 378 59.0
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 7.9e-115 417.9 372 59.1
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.0e-114 417.5 374 59.6
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.0e-114 417.5 375 59.5
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.8e-114 416.8 446 54.3
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.8e-114 416.8 375 60.3
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 5.1e-114 415.2 382 60.2
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 5.1e-114 415.2 378 58.5
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.1e-113 414.1 383 58.2
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 1.5e-113 413.7 377 58.6
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.7e-112 409.1 357 59.9
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.7e-112 409.1 357 59.9
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 4.1e-111 405.6 390 55.9
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 5.3e-111 405.2 383 57.2
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 1.2e-110 404.1 354 59.6
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.2e-110 404.1 386 57.3
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 8.5e-109 397.9 356 60.1
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 1.9e-108 396.7 306 66.7
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 2.5e-108 396.4 355 58.9
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 4.2e-108 395.6 355 58.6
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 1.2e-107 394.0 414 54.3
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.0e-106 391.0 321 62.9
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 9.7e-105 384.4 291 67.4
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 6.9e-103 378.3 282 68.8
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 8.5e-101 371.3 377 56.5
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.4e-95 354.0 364 51.6
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 3.1e-95 352.8 298 60.7
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 9.1e-95 351.3 388 49.7
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 1.3e-93 347.4 389 49.6
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 2.9e-93 346.3 347 53.3
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 2.3e-90 336.7 307 59.9
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 6.7e-90 335.1 388 48.2
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.2e-88 330.1 282 61.0
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.0e-85 321.2 382 49.7
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.1e-79 301.2 378 46.6
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.1e-79 299.3 248 65.7
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 2.6e-73 280.0 405 44.0
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 3.7e-72 276.2 269 54.6
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 5.4e-71 272.3 348 46.3
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.7e-64 249.6 366 43.7
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 2.3e-58 230.3 165 70.3
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 2.0e-54 217.2 158 69.0
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 1.6e-51 207.6 115 90.4
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 1.3e-48 198.0 185 58.9
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 3.2e-47 193.4 152 63.2
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 2.3e-45 187.2 111 85.6
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 8.6e-45 185.3 138 68.1
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 3.3e-44 183.3 134 70.9
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 4.7e-43 179.5 124 74.2
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 3.7e-40 169.9 555 26.8
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 7.8e-38 162.2 269 41.3
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.6e-35 154.5 117 69.2
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 1.3e-32 144.8 160 48.1
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 1.5e-25 121.3 136 49.3
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 1.5e-25 121.3 136 49.3
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 1.5e-25 121.3 136 49.3
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 1.5e-25 121.3 136 49.3
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 2.2e-24 117.5 197 41.1
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 8.4e-24 115.5 215 36.3
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 6.6e-21 105.9 90 65.6
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 6.2e-19 99.4 106 50.0
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 1.8e-18 97.8 72 62.5
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 1.8e-18 97.8 78 65.4
arahy.Tifrunner.gnm1.ann1.2X7NJS Arachis hypogaea HOM05D004236 ORTHO05D004903 9.0e-18 95.5 72 61.1
arahy.Tifrunner.gnm1.ann1.RD0JM0 Arachis hypogaea HOM05D004236 ORTHO05D004903 1.2e-17 95.1 68 64.7
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 2.2e-16 90.9 137 39.4
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 4.9e-16 89.7 59 74.6
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 2.1e-14 84.3 80 65.0
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 6.0e-14 82.8 79 54.4
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.8e-13 81.3 75 62.7
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 3.0e-13 80.5 236 30.5
Lsat_1_v5_gn_2_36660 Lactuca sativa HOM05D004236 ORTHO05D004903 5.1e-13 79.7 65 60.0
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 5.6e-12 76.3 71 50.7
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.3e-11 75.1 97 46.4
Hma1.2p1_1189F.1_g265360 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 6.9e-10 69.3 99 38.4
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 2.0e-09 67.8 75 52.0
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 1.3e-08 65.1 106 37.7
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla HOM05D001472 ORTHO05D004903 1.7e-08 64.7 66 47.0
BraA02t06426Z Brassica rapa HOM05D004236 ORTHO05D004903 2.4e-07 60.8 37 75.7
SHI07811 Sapria himalayana HOM05D004236 ORTHO05D004903 2.4e-07 60.8 43 60.5
Hma1.2p1_0071F.1_g038110 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 4.2e-07 60.1 34 73.5
unitig_736.g22563 Utricularia gibba HOM05D004236 ORTHO05D004903 1.2e-06 58.5 48 60.4


User provided reference genes

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