Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.7e-230 800.8 396 100.0
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.5e-177 625.2 391 76.7
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 3.3e-175 618.6 404 74.0
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.1e-173 612.1 392 76.0
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.0e-172 609.4 392 75.3
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 7.3e-167 590.9 394 72.3
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.6e-166 589.7 391 72.6
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 4.0e-165 585.1 394 72.6
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 4.0e-165 585.1 390 72.6
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.0e-164 582.8 394 71.8
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 4.5e-164 581.6 396 72.5
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 5.8e-164 581.3 392 70.7
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 8.4e-163 577.4 391 72.4
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.4e-162 576.6 391 71.6
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.9e-162 576.2 391 69.3
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 7.1e-162 574.3 392 71.7
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 3.5e-161 572.0 390 72.1
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 3.5e-161 572.0 392 71.7
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.9e-161 570.9 406 69.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.0e-160 570.5 392 70.7
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.7e-160 567.8 391 70.8
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.5e-159 566.6 391 70.6
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.5e-159 566.6 392 70.9
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.9e-159 566.2 391 71.1
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 7.4e-159 564.3 391 71.4
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 7.4e-159 564.3 392 69.1
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-158 562.4 391 69.8
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 8.1e-158 560.8 393 68.7
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.4e-157 560.1 391 69.3
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 3.1e-157 558.9 391 66.8
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 4.0e-157 558.5 392 69.9
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 6.9e-157 557.8 419 65.6
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 7.6e-156 554.3 395 67.6
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.3e-155 553.5 391 68.8
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.7e-155 553.1 391 70.1
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 6.4e-155 551.2 391 69.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.9e-154 549.7 395 68.1
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.5e-154 548.1 391 68.3
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 7.1e-154 547.7 393 67.9
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 7.1e-154 547.7 394 67.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 9.3e-154 547.4 393 68.2
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 9.3e-154 547.4 391 70.1
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.1e-153 546.2 391 67.5
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 2.7e-153 545.8 386 66.8
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 6.0e-153 544.7 395 67.3
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 6.0e-153 544.7 392 67.6
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 7.9e-153 544.3 395 67.6
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 1.8e-152 543.1 391 65.2
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 2.3e-152 542.7 396 66.9
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 5.1e-152 541.6 417 65.0
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 5.1e-152 541.6 448 61.6
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 6.7e-152 541.2 392 66.8
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 8.7e-152 540.8 416 65.1
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 8.7e-152 540.8 385 67.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.1e-151 540.4 391 67.3
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.5e-151 539.3 393 66.7
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 2.5e-151 539.3 395 67.1
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 4.3e-151 538.5 393 65.9
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 5.6e-151 538.1 396 65.7
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 7.4e-151 537.7 391 67.0
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 2.1e-150 536.2 391 68.0
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.7e-150 535.4 381 69.0
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 6.2e-150 534.6 393 67.2
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 8.2e-150 534.3 392 67.1
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.8e-149 533.1 395 66.8
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 5.3e-149 531.6 392 66.8
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 3.4e-148 528.9 396 65.9
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 4.5e-148 528.5 394 66.2
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 1.4e-146 523.5 391 66.0
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 5.5e-146 521.5 381 67.7
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.6e-145 520.0 396 64.1
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 7.9e-145 517.7 468 57.9
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 6.7e-144 514.6 503 55.1
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.3e-142 510.4 360 69.7
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 4.8e-142 508.4 393 65.4
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 5.3e-141 505.0 393 63.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.6e-140 502.7 426 60.3
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 1.0e-139 500.7 356 68.8
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 5.5e-138 495.0 426 59.6
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.3e-135 485.7 330 70.0
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 5.3e-133 478.4 432 58.8
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 5.3e-133 478.4 442 57.5
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 6.9e-133 478.0 394 58.9
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.9e-129 464.5 390 59.7
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 8.8e-128 461.1 359 64.3
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.5e-127 460.3 313 71.9
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.7e-126 455.7 381 61.4
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 9.1e-125 451.1 391 58.8
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 1.2e-124 450.7 351 62.4
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 1.7e-118 430.3 283 73.9
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.1e-114 417.5 398 54.8
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.1e-113 413.3 272 73.9
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.0e-112 411.0 360 58.1
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.0e-101 371.7 295 64.1
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 1.9e-98 363.6 403 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.6e-97 360.5 401 47.9
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.4e-93 346.7 234 73.1
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.7e-91 340.5 254 67.3
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.1e-90 337.8 397 45.8
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.8e-88 330.5 294 55.8
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 1.7e-86 323.9 240 67.9
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.1e-82 311.2 220 67.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 7.3e-82 308.5 482 38.2
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.9e-75 286.2 368 42.4
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.9e-66 257.3 193 66.3
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 7.6e-63 245.4 320 41.9
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 5.4e-53 212.6 142 70.4
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 3.9e-43 179.9 535 27.1
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 1.9e-37 161.0 130 63.1
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 5.5e-37 159.5 109 67.9
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-33 147.1 119 61.3
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-33 147.1 119 61.3
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-33 147.1 119 61.3
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-33 147.1 119 61.3
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-32 145.2 119 60.5
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-32 144.8 119 60.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.0e-32 142.1 96 68.8
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.0e-30 138.7 106 61.3
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-30 137.9 106 59.4
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-29 134.8 104 59.6
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.6e-28 131.3 80 76.2
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.5e-26 124.8 79 72.2
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.9e-26 124.4 81 70.4
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 3.3e-26 123.6 171 42.1
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 4.3e-26 123.2 109 56.9
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.3e-24 116.3 71 74.6
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-23 114.8 182 36.8
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-20 105.1 62 77.4
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-20 105.1 62 77.4
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.6e-20 103.6 62 75.8
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 6.7e-19 99.4 141 46.1
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.3e-18 97.1 62 74.2
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 9.7e-18 95.5 60 73.3
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.7e-18 95.5 62 71.0
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 9.7e-18 95.5 121 44.6
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.7e-17 94.7 69 60.9
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.8e-16 91.3 71 60.6
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-15 87.4 106 42.5
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 9.4e-13 79.0 54 74.1
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 3.0e-11 73.9 59 66.1
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.3e-09 68.6 78 39.7
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 1.1e-08 65.5 47 61.7
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 4.5e-07 60.1 56 48.2
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.8e-06 57.0 34 76.5
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 5.0e-06 56.6 32 71.9


User provided reference genes

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