Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 5.3e-88 327.8 182 100.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 4.1e-48 195.3 186 65.1
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 7.8e-39 164.5 187 56.1
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 5.1e-38 161.8 187 56.1
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 6.6e-38 161.4 193 55.4
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.9e-37 159.8 187 55.1
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.6e-36 155.6 193 55.4
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.1e-35 154.1 192 54.7
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.4e-35 153.7 189 55.6
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 2.0e-34 149.8 191 53.9
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 4.4e-34 148.7 184 54.9
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.3e-33 147.1 189 54.0
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.8e-33 145.6 190 53.7
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 6.4e-33 144.8 176 56.8
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.4e-32 143.7 198 52.5
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.4e-32 142.9 182 53.3
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 4.1e-32 142.1 185 55.7
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 9.2e-32 141.0 134 61.2
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.2e-31 140.6 183 54.6
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.6e-31 140.2 184 52.7
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 3.5e-31 139.0 187 53.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 3.5e-31 139.0 192 52.1
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 6.0e-31 138.3 186 52.7
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 7.8e-31 137.9 181 51.9
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.3e-30 137.1 195 54.4
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.3e-30 137.1 155 56.8
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 2.3e-30 136.3 124 66.9
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 3.9e-30 135.6 186 52.2
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 6.6e-30 134.8 195 50.8
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 8.6e-30 134.4 132 62.9
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.1e-29 134.0 181 49.7
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.5e-29 133.7 123 66.7
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.5e-29 133.7 184 51.1
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.5e-29 133.7 184 51.1
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.5e-29 133.7 190 52.6
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 2.5e-29 132.9 189 50.8
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.5e-29 132.9 188 50.0
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.3e-29 132.5 130 63.8
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 3.3e-29 132.5 88 81.8
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.3e-29 132.5 184 50.5
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.3e-29 132.1 179 51.4
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 4.3e-29 132.1 182 50.5
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 5.6e-29 131.7 124 62.1
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 5.6e-29 131.7 184 50.5
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 5.6e-29 131.7 150 56.0
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 7.3e-29 131.3 90 74.4
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 7.3e-29 131.3 90 74.4
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 7.3e-29 131.3 90 74.4
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 7.3e-29 131.3 188 49.5
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 7.3e-29 131.3 182 47.8
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.6e-29 131.0 186 52.2
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 9.6e-29 131.0 188 49.5
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 9.6e-29 131.0 124 62.9
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 1.2e-28 130.6 88 81.8
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.2e-28 130.6 95 73.7
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 2.1e-28 129.8 87 77.0
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 2.1e-28 129.8 87 77.0
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.1e-28 129.8 144 57.6
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.1e-28 129.8 202 46.0
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.1e-28 129.8 184 52.2
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.1e-28 129.8 191 51.8
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 2.8e-28 129.4 95 69.5
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.6e-28 129.0 187 49.7
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 4.7e-28 128.6 90 72.2
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 4.7e-28 128.6 89 74.2
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.7e-28 128.6 144 56.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 4.7e-28 128.6 119 63.0
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 6.2e-28 128.3 128 60.9
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.1e-27 127.5 117 65.0
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.4e-27 127.1 186 50.0
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.4e-27 127.1 128 61.7
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.4e-27 127.1 88 72.7
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.4e-27 127.1 202 47.5
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.8e-27 126.7 123 61.0
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.8e-27 126.7 118 63.6
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.8e-27 126.7 82 84.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.4e-27 126.3 213 46.5
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 4.0e-27 125.6 120 60.8
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 5.2e-27 125.2 184 48.4
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 6.9e-27 124.8 202 44.1
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 6.9e-27 124.8 90 74.4
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-26 124.0 179 46.9
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.2e-26 124.0 111 64.9
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.5e-26 123.6 167 49.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.5e-26 123.6 173 47.4
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.6e-26 122.9 196 48.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.4e-26 122.5 190 45.8
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 3.4e-26 122.5 190 48.4
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 3.4e-26 122.5 181 48.6
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.4e-26 122.5 183 48.6
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 4.4e-26 122.1 183 47.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 5.8e-26 121.7 149 50.3
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 9.9e-26 120.9 180 46.7
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 9.9e-26 120.9 176 45.5
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.3e-25 120.6 182 47.8
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.7e-25 120.2 179 46.9
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.2e-25 119.8 179 46.9
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 2.2e-25 119.8 175 46.9
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 2.9e-25 119.4 184 46.2
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 3.8e-25 119.0 88 69.3
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.8e-25 119.0 93 67.7
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.2e-24 115.9 225 43.1
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.1e-23 113.2 193 41.5
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 4.6e-23 112.1 108 60.2
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 3.0e-22 109.4 77 72.7
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.1e-21 107.5 167 43.7
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.1e-21 107.5 107 59.8
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.9e-21 106.7 79 68.4
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 9.6e-21 104.4 73 75.3
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.6e-20 103.6 72 76.4
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 3.1e-19 99.4 97 55.7
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 9.0e-19 97.8 78 61.5
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.5e-18 97.1 96 55.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.2e-17 93.2 102 52.9
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 8.4e-17 91.3 112 48.2
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.1e-16 90.9 165 38.8
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.1e-16 88.2 57 80.7
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.3e-13 79.0 119 40.3
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.4e-13 78.2 63 73.0
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.8e-11 73.6 58 70.7
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 9.0e-11 71.2 175 36.6
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 9.9e-10 67.8 43 76.7
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 2.2e-09 66.6 171 35.1
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.9e-08 63.5 148 39.2
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.1e-07 60.1 121 41.3
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 7.9e-07 58.2 117 34.2
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 5.1e-06 55.5 150 36.7
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 6.7e-06 55.1 110 46.4


User provided reference genes

Program Settings