Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 3.5e-46 188.0 96 100.0
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 2.9e-24 115.2 96 59.4
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 3.2e-23 111.7 96 62.5
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 4.1e-23 111.3 88 63.6
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.3e-21 106.3 96 52.1
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.7e-21 105.9 97 55.7
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 2.3e-21 105.5 96 51.0
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 3.9e-21 104.8 86 57.0
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.9e-20 102.4 95 54.7
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 2.5e-20 102.1 96 53.1
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 2.5e-20 102.1 96 55.2
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 3.3e-20 101.7 86 55.8
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-19 99.8 94 56.4
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.6e-19 99.4 96 51.0
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.1e-19 99.0 86 54.7
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.8e-19 98.6 86 54.7
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.7e-19 97.8 86 52.3
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.2e-19 97.4 87 49.4
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.1e-18 96.7 83 56.6
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 1.4e-18 96.3 96 51.0
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.4e-18 96.3 86 53.5
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 1.8e-18 95.9 97 52.6
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 2.6e-17 92.0 96 54.2
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 7.6e-17 90.5 97 55.7
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.2e-16 89.0 95 50.5
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 6.4e-16 87.4 96 50.0
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 8.3e-16 87.0 80 55.0
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 1.9e-15 85.9 96 45.8
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.9e-15 85.9 86 50.0
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 5.4e-15 84.3 94 52.1
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 7.1e-15 84.0 71 64.8
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 1.2e-14 83.2 98 50.0
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.2e-14 83.2 97 50.5
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 2.7e-14 82.0 87 46.0
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.6e-14 81.3 97 42.3
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 7.8e-14 80.5 97 49.5
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.8e-14 80.5 97 41.2
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.7e-13 79.3 97 44.3
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 1.7e-13 79.3 88 43.2
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.3e-13 79.0 97 41.2
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.0e-13 78.6 80 47.5
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 6.6e-13 77.4 89 43.8
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 2.5e-12 75.5 87 41.4
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 5.6e-12 74.3 85 48.2
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 5.6e-12 74.3 87 43.7
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 7.3e-12 73.9 89 52.8
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 2.1e-11 72.4 105 40.0
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 4.7e-11 71.2 89 47.2
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 8.1e-11 70.5 98 40.8
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.8e-10 69.3 95 43.2
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.8e-10 69.3 92 46.7
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 2.4e-10 68.9 81 45.7
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.1e-10 68.6 92 44.6
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.1e-10 68.6 92 44.6
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 3.1e-10 68.6 84 41.7
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 3.1e-10 68.6 94 40.4
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.0e-10 68.2 96 46.9
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 8.9e-10 67.0 96 47.9
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.2e-09 66.6 90 46.7
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 1.5e-09 66.2 92 42.4
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 1.5e-09 66.2 92 41.3
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 3.4e-09 65.1 92 39.1
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 4.4e-09 64.7 85 40.0
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.4e-09 64.7 95 42.1
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 5.8e-09 64.3 95 44.2
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 5.8e-09 64.3 95 43.2
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 7.6e-09 63.9 95 43.2
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 1.7e-08 62.8 94 38.3
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.7e-08 62.8 95 43.2
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.9e-08 62.0 90 46.7
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.9e-08 62.0 90 46.7
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 3.8e-08 61.6 86 39.5
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.9e-08 61.2 87 37.9
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-07 60.1 90 45.6
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 1.4e-07 59.7 87 40.2
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.9e-07 59.3 98 38.8
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.4e-07 58.9 87 35.6
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.2e-07 58.5 87 35.6
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 4.2e-07 58.2 95 37.9
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 9.3e-07 57.0 107 39.3
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 9.3e-07 57.0 90 40.0
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.2e-06 56.6 89 36.0
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 3.5e-06 55.1 94 36.2
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 4.6e-06 54.7 95 41.1
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 7.8e-06 53.9 94 36.2
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 7.8e-06 53.9 89 37.1


User provided reference genes

Program Settings