Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 2558.1 1294 100.0
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1775.8 1267 69.5
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 1752.3 1278 69.2
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1748.8 1280 68.7
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1746.5 1278 68.9
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1689.9 1281 66.0
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1683.7 1283 66.2
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1671.8 1296 63.8
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 1665.2 1280 65.2
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1662.5 1268 64.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1659.4 1276 64.1
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1659.4 1286 64.2
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1657.5 1276 64.4
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 1652.5 1344 64.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 1651.0 1283 64.0
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1651.0 1275 64.3
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1650.2 1257 64.2
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 1646.7 1280 65.2
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 1615.1 1286 62.4
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1614.7 1285 63.9
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 1614.4 1277 63.7
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 1613.6 1270 62.4
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1612.0 1282 63.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 1608.6 1312 61.9
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 1603.2 1284 61.6
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 1591.2 1284 61.3
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 1579.3 1283 61.7
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 1577.0 1281 62.0
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1573.9 1261 63.5
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 1557.7 1280 61.8
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1555.8 1286 61.0
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1546.9 1281 61.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1546.2 1259 60.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 1522.3 1285 59.3
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1517.7 1285 59.7
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 1511.9 1285 59.5
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1509.2 1264 60.0
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1500.0 1183 63.8
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 1496.9 1286 58.4
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1492.2 1264 59.6
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1490.3 1288 58.3
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 1489.2 1284 58.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1480.7 1435 56.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1479.2 1285 58.1
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1477.2 1267 58.0
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1473.8 1286 58.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1472.6 1458 53.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1471.8 1263 58.3
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1469.9 1284 57.3
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1455.7 1276 58.5
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1447.2 1261 58.8
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1442.9 1286 57.0
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1439.1 1279 57.5
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1439.1 1279 57.5
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1435.2 1279 57.2
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1433.7 1288 57.1
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1433.3 1229 60.8
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1432.9 1276 57.3
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1431.8 1282 57.8
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1429.5 1278 57.0
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1429.5 1278 57.0
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1429.1 1278 57.1
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1426.4 1283 56.7
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1425.2 1277 56.9
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1419.4 1284 56.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1418.7 1265 56.8
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1411.0 1279 56.6
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1410.2 1265 56.4
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1408.7 1265 57.0
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1402.9 1296 55.6
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1399.4 1299 55.4
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1378.2 1285 56.1
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1367.4 1280 56.9
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1343.2 1585 46.6
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1301.6 1128 58.1
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1294.3 1260 52.9
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1274.2 1303 51.6
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1235.3 1174 56.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1229.2 1285 51.5
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1224.2 1147 54.8
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1201.8 1082 56.3
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1199.1 1061 58.9
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.7e-287 992.6 957 56.2
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 2.6e-277 959.5 1145 44.9
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 2.3e-270 936.4 1296 41.0
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 2.6e-261 906.4 1311 39.6
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 3.5e-258 896.0 778 59.3
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 4.7e-247 859.0 1297 38.4
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 7.1e-243 845.1 998 46.1
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.6e-231 807.4 971 46.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 7.6e-229 798.5 739 54.0
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 3.8e-228 796.2 753 54.3
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 5.8e-213 745.7 1387 34.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 4.6e-186 656.4 494 67.0
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 3.6e-170 603.6 540 56.9
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 2.7e-157 560.8 522 57.3
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.2e-136 492.3 393 63.1
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.7e-124 451.8 292 74.0
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.6e-114 418.7 708 37.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 8.4e-95 353.2 216 80.6
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.9e-94 352.1 252 65.1
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 2.9e-87 328.2 331 54.4
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 8.8e-60 236.9 203 53.2
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 6.3e-58 230.7 330 42.7
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.4e-51 208.0 200 46.5
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.2e-45 189.9 171 51.5
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.2e-43 183.3 293 39.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.6e-29 136.3 97 67.0
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 7.5e-27 127.5 283 31.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 2.9e-26 125.6 132 47.0
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.7e-26 125.2 96 57.3
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 5.4e-25 121.3 133 48.1
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 8.9e-20 104.0 143 46.2
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 2.6e-19 102.4 106 53.8
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.4e-17 96.7 107 45.8
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.7e-15 89.7 288 26.7
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 4.3e-14 85.1 291 26.1
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.2e-13 83.6 74 51.4
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.2e-13 83.6 74 51.4
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.6e-13 83.2 201 29.4
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.8e-13 82.4 74 50.0
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 2.8e-13 82.4 210 28.1
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 8.9e-12 77.4 52 63.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.4e-11 75.1 86 48.8
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 9.9e-11 73.9 121 33.9
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.7e-10 73.2 88 39.8
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 4.9e-10 71.6 119 33.6
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 4.9e-10 71.6 51 58.8
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 7.1e-09 67.8 105 35.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 2.7e-08 65.9 113 36.3
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 2.7e-08 65.9 113 36.3
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.7e-07 63.2 74 40.5
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 1.9e-06 59.7 45 64.4


User provided reference genes

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