Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1380.9 720 100.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1265.4 720 89.7
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1236.1 720 89.3
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1235.3 720 88.6
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1234.2 715 89.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1227.6 720 88.1
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1223.4 720 87.6
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1213.0 709 88.0
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1213.0 718 86.6
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1211.1 720 86.9
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1208.7 714 86.1
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1206.0 707 87.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1203.3 712 86.0
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1203.0 711 86.2
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1203.0 707 87.0
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1201.0 707 86.6
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1197.6 711 87.2
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1196.4 716 85.1
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 718 85.2
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1195.3 718 85.4
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1192.6 718 85.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 720 85.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 711 86.2
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1191.4 720 86.2
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1191.4 718 84.5
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1190.3 709 85.8
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1189.5 715 84.2
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1189.1 711 85.8
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1186.8 706 86.0
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1186.4 719 84.8
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1185.6 711 85.5
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1182.9 711 85.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1182.5 713 85.0
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1182.5 711 85.8
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1181.8 734 83.7
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1178.7 713 85.6
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1175.6 718 84.0
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1174.1 708 84.5
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1173.3 708 84.2
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1171.4 709 84.1
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1171.4 720 83.9
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1169.8 708 84.7
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1163.3 702 84.6
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1159.4 711 83.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1158.7 712 83.4
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1157.1 700 84.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1156.7 719 84.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1152.5 720 84.3
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1149.8 693 85.0
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1149.4 718 83.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1149.4 718 83.1
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1149.4 720 83.9
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1148.3 711 82.6
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1139.0 699 83.0
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1132.9 711 82.6
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1132.9 715 82.2
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1130.9 712 81.7
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 712 79.5
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 712 79.8
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1129.0 687 85.6
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 749 79.7
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1120.1 699 81.7
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1118.6 712 78.7
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 706 83.1
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1113.6 712 78.8
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1105.5 708 79.5
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 708 79.4
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 708 78.5
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 708 79.2
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 708 79.2
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 708 79.2
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 706 79.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 708 78.8
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1099.7 708 79.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1097.0 708 81.5
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1096.6 709 78.6
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 708 77.8
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 706 77.2
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1088.2 709 77.2
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1086.2 705 77.6
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1084.7 705 77.4
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1083.6 661 83.2
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1083.2 731 78.4
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1082.0 710 78.2
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 705 77.4
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 705 77.4
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 705 77.4
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1079.7 623 88.0
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1076.6 705 77.2
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.2e-309 1064.7 666 83.0
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 5.9e-308 1060.4 624 86.5
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.9e-306 1055.4 716 79.2
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.4e-304 1049.3 691 80.2
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.7e-302 1041.2 701 77.9
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.9e-301 1038.9 716 75.1
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.1e-297 1025.4 709 73.8
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 2.1e-297 1025.4 662 78.7
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.1e-296 1021.5 706 73.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 8.9e-296 1020.0 700 74.7
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.4e-295 1018.1 709 74.6
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.4e-293 1012.7 710 73.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.2e-289 999.6 721 73.9
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.4e-286 986.9 747 72.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.1e-285 984.6 652 76.1
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.2e-285 983.4 710 72.8
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.3e-282 974.9 546 91.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.6e-281 972.6 589 85.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.9e-278 961.1 569 86.8
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.6e-265 919.5 742 69.5
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.0e-263 912.5 704 70.9
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 8.4e-254 880.6 701 67.3
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.3e-242 841.6 570 76.3
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.6e-241 839.7 529 81.1
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 9.4e-237 823.9 542 79.7
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 5.9e-231 804.7 457 91.5
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 9.1e-208 727.6 687 56.0
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 1.3e-206 723.8 626 63.4
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-200 702.2 563 70.5
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.3e-195 686.4 637 56.0
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.9e-190 669.1 409 84.8
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.5e-189 667.2 399 86.2
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-183 647.5 517 68.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.1e-172 610.1 643 49.9
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 3.1e-163 579.7 724 50.1
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 6.9e-163 578.6 641 48.8
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.6e-162 575.1 641 49.0
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.6e-159 565.8 406 76.6
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.4e-139 501.1 627 43.9
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.2e-137 493.8 643 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.1e-134 482.6 642 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.0e-130 470.7 629 42.9
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.7e-127 460.3 306 74.8
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.6e-106 391.3 404 53.2
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.0e-105 386.3 253 80.2
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.5e-104 384.0 399 58.9
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 4.8e-92 343.2 218 75.2
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.3e-72 276.2 233 67.0
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 7.1e-59 233.0 133 84.2
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-55 221.1 171 72.5
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.6e-37 161.4 140 56.4
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.3e-32 144.1 82 85.4
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 3.2e-27 127.9 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.1e-25 120.6 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.7e-23 114.4 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 6.2e-23 113.6 92 63.0
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 3.0e-17 94.7 63 77.8
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 4.8e-15 87.4 56 69.6
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 1.5e-13 82.4 67 62.7
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 4.5e-13 80.9 67 61.2
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.9e-11 75.5 61 62.3
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.2e-10 72.8 61 60.7
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 73.3


User provided reference genes

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