Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.6e-217 758.4 380 100.0
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.1e-162 577.0 409 71.4
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 9.9e-161 570.5 401 72.1
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 9.9e-161 570.5 397 72.8
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.8e-155 552.4 409 68.9
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 1.1e-154 550.4 393 71.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.8e-154 549.7 393 70.2
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 2.4e-154 549.3 406 69.2
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 4.0e-154 548.5 406 69.5
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.6e-153 545.8 409 68.9
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.6e-153 545.8 409 68.9
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 9.9e-153 543.9 406 68.7
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 2.2e-152 542.7 406 69.0
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.4e-152 540.8 409 68.5
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.6e-150 536.6 409 67.7
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.7e-150 535.8 408 67.4
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.1e-147 526.2 406 66.0
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 3.1e-146 522.3 406 65.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 4.0e-146 521.9 406 67.5
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.2e-146 521.5 471 60.7
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.8e-144 515.4 393 68.4
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.1e-143 513.8 406 66.3
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.9e-143 513.1 405 64.7
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.2e-143 512.3 405 64.7
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 9.3e-143 510.8 409 66.7
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 3.5e-142 508.8 410 65.4
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.0e-142 508.1 406 63.8
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 6.0e-142 508.1 411 64.7
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.0e-141 507.3 393 65.1
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.0e-141 507.3 409 65.8
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.3e-141 506.9 410 64.6
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.3e-141 506.1 406 63.8
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 2.3e-141 506.1 448 59.8
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 3.0e-141 505.8 409 63.6
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.9e-140 503.1 409 63.8
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 2.5e-140 502.7 406 66.0
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 3.3e-140 502.3 409 64.8
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.3e-140 502.3 406 65.8
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.6e-140 501.5 377 68.4
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 7.3e-140 501.1 416 63.2
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 9.6e-140 500.7 408 63.2
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 3.6e-139 498.8 409 63.6
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 6.2e-139 498.0 409 64.5
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.1e-138 497.3 406 64.5
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.4e-138 496.1 415 62.7
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.2e-137 493.8 409 63.1
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.5e-137 493.4 448 60.9
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.0e-137 493.0 392 66.1
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 2.0e-137 493.0 396 63.6
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.9e-136 489.2 409 62.6
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.8e-136 488.8 397 62.7
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 4.9e-136 488.4 397 63.0
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.4e-136 488.0 397 62.7
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 8.4e-136 487.6 396 63.4
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 8.4e-136 487.6 397 62.7
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 4.2e-135 485.3 396 62.4
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.2e-134 483.8 399 62.7
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 2.7e-134 482.6 409 62.3
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.7e-134 482.6 409 62.1
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.9e-134 481.1 409 63.3
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 3.0e-133 479.2 409 60.6
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 6.7e-133 478.0 409 60.6
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 8.7e-133 477.6 403 60.5
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.9e-132 476.5 409 60.9
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.9e-132 476.5 441 59.9
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.9e-132 476.5 410 61.0
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 2.5e-132 476.1 410 61.2
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 2.5e-132 476.1 411 61.1
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 5.6e-132 474.9 409 60.4
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 7.4e-132 474.6 409 59.9
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 9.6e-132 474.2 409 60.6
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 2.8e-131 472.6 430 58.8
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 4.8e-131 471.9 409 60.6
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 6.2e-131 471.5 409 60.1
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 8.1e-131 471.1 410 60.5
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.1e-130 470.7 402 62.2
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.8e-130 469.9 421 60.8
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 7.6e-129 464.5 409 58.9
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.7e-128 463.4 412 61.4
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 4.9e-128 461.8 409 60.6
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.2e-126 457.2 406 60.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.1e-124 450.7 366 66.9
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.3e-123 447.2 406 58.9
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 6.2e-123 444.9 402 58.0
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 3.1e-122 442.6 393 58.5
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.0e-120 437.6 288 74.7
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 3.8e-120 435.6 403 57.3
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 7.1e-119 431.4 357 61.9
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 2.5e-116 422.9 414 56.0
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 6.9e-114 414.8 409 55.5
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.5e-111 406.4 364 59.3
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 1.2e-110 404.1 368 58.4
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.2e-110 404.1 269 72.5
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 4.1e-106 389.0 344 59.6
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 9.1e-106 387.9 393 52.4
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.2e-105 387.5 315 64.4
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.4e-105 386.0 409 52.6
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.1e-103 380.9 353 56.9
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 5.5e-103 378.6 312 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.1e-102 376.7 393 53.2
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 3.6e-102 375.9 403 53.1
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.1e-100 370.9 396 52.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.0e-97 360.1 306 65.0
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.2e-94 350.9 423 50.4
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 3.6e-94 349.4 307 60.9
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 8.0e-94 348.2 286 60.1
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 1.4e-93 347.4 305 61.0
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 1.8e-93 347.1 312 60.6
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.3e-93 346.7 254 66.1
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 1.1e-90 337.8 283 61.1
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 3.5e-89 332.8 314 58.6
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.0e-88 331.3 314 57.6
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.0e-88 331.3 387 48.1
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 2.6e-84 316.6 373 48.5
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.0e-78 295.0 384 49.0
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.4e-77 294.3 547 35.5
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.8e-77 293.9 240 60.0
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.0e-73 280.4 366 44.3
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.0e-72 278.1 243 60.9
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 8.9e-69 265.0 330 50.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.3e-67 261.2 215 61.4
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.1e-63 248.1 356 44.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 6.0e-57 225.7 337 45.4
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.6e-56 221.9 146 75.3
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.6e-54 216.5 181 61.9
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 3.4e-52 209.9 138 71.7
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 4.9e-51 206.1 190 59.5
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 1.0e-48 198.4 404 36.1
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-48 198.0 378 35.7
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 6.2e-46 189.1 455 31.6
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 7.5e-44 182.2 399 36.1
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 4.9e-43 179.5 111 76.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 7.3e-39 165.6 397 35.5
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 7.6e-36 155.6 205 46.8
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.3e-35 154.8 121 68.6
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.0e-32 143.7 333 33.9
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.5e-31 141.4 121 63.6
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 3.1e-29 133.7 128 58.6
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 4.0e-29 133.3 129 56.6
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 5.3e-29 132.9 76 86.8
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 8.4e-27 125.6 120 59.2
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.4e-26 124.8 76 77.6
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.2e-19 100.9 62 77.4
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.2e-19 100.9 62 77.4
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.9e-19 99.8 60 80.0
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.2e-18 96.7 66 68.2
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 5.4e-18 96.3 367 28.6
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 6.0e-17 92.8 233 36.9
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.3e-16 91.7 57 82.5
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 4.8e-14 83.2 125 42.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 7.9e-09 65.9 65 49.2
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 5.1e-08 63.2 62 46.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 6.7e-08 62.8 62 46.8
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 1.9e-07 61.2 60 48.3


User provided reference genes

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