Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 0.0e+00 1110.1 551 100.0
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.6e-257 892.5 532 82.5
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 5.3e-256 887.5 532 81.8
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 6.5e-254 880.6 533 82.0
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 8.4e-254 880.2 532 82.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.4e-253 879.4 533 81.8
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.9e-253 879.0 532 81.6
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 4.2e-253 877.9 533 81.4
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.0e-252 874.0 549 79.6
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.0e-251 873.2 533 81.4
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.3e-251 872.1 536 80.6
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 3.9e-251 871.3 532 80.1
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.5e-250 869.4 530 80.9
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 5.7e-250 867.5 532 80.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 7.4e-250 867.1 532 80.5
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 9.6e-250 866.7 532 80.1
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.3e-249 866.3 532 79.3
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.1e-248 863.2 532 80.1
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 2.4e-248 862.1 533 79.5
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 3.1e-248 861.7 532 80.3
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 3.1e-248 861.7 532 80.1
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 3.1e-248 861.7 534 78.8
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 3.1e-248 861.7 551 77.1
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.0e-248 860.1 532 79.9
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 9.0e-248 860.1 531 79.5
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-247 859.8 532 79.7
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 1.0e-246 856.7 532 78.8
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.3e-246 856.3 533 78.8
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 2.9e-246 855.1 533 78.0
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 2.9e-246 855.1 532 78.6
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.8e-246 854.7 531 78.0
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.1e-245 853.2 532 78.2
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.1e-245 853.2 532 79.3
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.2e-245 851.7 532 78.8
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 7.2e-245 850.5 541 77.3
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.6e-244 849.4 530 78.7
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 6.1e-244 847.4 531 77.8
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 3.9e-243 844.7 530 78.5
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 3.9e-243 844.7 532 78.6
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 5.1e-243 844.3 530 77.5
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 6.7e-243 844.0 532 77.3
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 8.7e-243 843.6 523 79.2
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 3.3e-242 841.6 534 77.0
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 4.3e-242 841.3 531 76.8
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 5.7e-242 840.9 551 75.5
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.6e-241 839.3 534 76.8
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.6e-241 839.3 533 76.5
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.1e-240 836.6 560 74.1
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.4e-240 835.5 532 75.9
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 3.1e-240 835.1 532 77.4
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 4.1e-240 834.7 532 77.3
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 4.1e-240 834.7 528 76.7
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 5.3e-240 834.3 533 76.2
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 5.3e-240 834.3 532 76.3
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-239 833.2 532 77.1
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.5e-239 832.8 531 77.6
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 5.9e-239 830.9 531 76.1
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 7.7e-239 830.5 530 76.8
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 1.0e-238 830.1 533 76.0
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 8.5e-238 827.0 531 75.7
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 2.5e-237 825.5 531 74.4
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 4.2e-237 824.7 533 77.5
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 3.6e-236 821.6 532 75.8
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 4.6e-236 821.2 533 75.0
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 6.1e-236 820.8 533 75.4
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 6.1e-236 820.8 519 77.6
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 6.1e-236 820.8 533 75.0
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 7.9e-236 820.5 528 75.6
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.8e-235 819.3 532 74.8
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 5.1e-235 817.8 530 75.1
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 6.7e-235 817.4 539 74.2
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 5.7e-234 814.3 489 81.8
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 7.4e-234 813.9 532 74.6
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 2.8e-233 812.0 534 76.2
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-233 812.0 533 74.3
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-233 812.0 533 74.3
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-233 812.0 533 74.3
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 4.8e-233 811.2 512 77.3
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 1.1e-232 810.1 533 74.5
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.4e-232 809.7 531 75.7
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 3.1e-232 808.5 533 74.3
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.6e-231 805.4 531 75.5
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 3.4e-231 805.1 533 73.9
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 3.4e-231 805.1 538 73.6
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 5.9e-231 804.3 533 73.7
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 2.2e-230 802.4 550 72.0
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 2.2e-230 802.4 528 74.2
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 2.9e-230 802.0 533 73.5
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 2.9e-230 802.0 538 73.4
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.1e-229 800.0 528 74.1
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.4e-229 799.7 534 73.6
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 5.5e-229 797.7 529 73.5
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 6.1e-228 794.3 529 74.9
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.0e-227 793.5 527 73.1
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.8e-227 792.7 528 72.9
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.9e-227 791.6 530 73.2
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.5e-226 789.6 576 70.0
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 2.6e-226 788.9 528 72.2
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.4e-226 788.1 528 73.3
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.8e-224 782.7 545 71.2
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.6e-223 778.9 535 74.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.2e-222 775.8 527 73.1
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 3.8e-222 775.0 528 72.0
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 6.5e-222 774.2 529 72.4
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 4.8e-217 758.1 576 68.1
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.4e-216 756.5 533 70.4
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 4.2e-213 745.0 527 69.8
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 9.4e-213 743.8 516 71.7
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.0e-211 740.3 523 69.0
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 4.0e-211 738.4 531 69.7
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.9e-206 722.2 530 66.6
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 5.0e-206 721.5 463 76.0
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 5.0e-206 721.5 448 79.0
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.5e-205 719.2 513 70.4
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 4.2e-205 718.4 462 75.5
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 9.5e-205 717.2 530 68.9
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 9.2e-200 700.7 513 68.6
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.0e-198 697.2 532 64.5
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.0e-198 697.2 527 63.6
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.3e-182 642.9 533 62.9
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.4e-176 622.9 522 58.6
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.5e-175 619.0 434 71.9
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.0e-174 617.5 392 77.0
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 5.6e-173 611.7 392 76.0
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.4e-171 607.1 507 57.2
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 3.9e-166 589.0 304 97.4
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.4e-163 580.5 392 73.5
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 7.1e-160 568.2 511 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 2.7e-159 566.2 548 53.8
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 4.5e-154 548.9 323 82.0
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.1e-147 527.7 443 57.1
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.5e-125 453.4 265 81.9
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 5.0e-121 439.1 297 71.4
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 6.1e-119 432.2 295 71.2
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 7.9e-119 431.8 307 69.1
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-118 431.4 243 88.5
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 8.8e-118 428.3 238 90.8
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.7e-116 424.1 292 70.2
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.2e-102 375.9 246 74.4
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.5e-98 363.2 246 72.0
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.9e-89 333.6 233 71.2
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 2.7e-82 310.5 241 67.6
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 9.5e-80 302.0 266 57.9
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-53 215.3 138 75.4
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.6e-53 214.2 137 75.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 4.4e-53 213.4 138 76.1
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.2e-52 211.1 139 74.1
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.9e-52 210.7 139 74.1
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 2.1e-50 204.5 180 60.0
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.1e-47 194.5 128 73.4
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 2.6e-37 161.0 98 77.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.4e-35 154.5 98 75.5
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 6.0e-26 123.2 106 61.3
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 4.5e-21 107.1 63 77.8
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.5e-21 107.1 63 79.4
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.7e-20 105.1 63 77.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 2.2e-20 104.8 61 73.8
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.9e-20 104.4 63 77.8
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.2e-19 100.5 63 74.6
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.5e-19 100.1 63 74.6
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 8.2e-15 86.3 496 23.8
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 2.4e-14 84.7 62 67.7
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 4.1e-14 84.0 50 76.0
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 7.2e-11 73.2 54 59.3
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 3.6e-10 70.9 54 63.0
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 8.2e-07 59.7 49 59.2
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 8.2e-07 59.7 49 59.2
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 3.1e-06 57.8 64 54.7


User provided reference genes

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