Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 8.1e-28 126.3 63 100.0
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 1.2e-15 85.9 53 75.5
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 2.1e-15 85.1 57 70.2
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 3.6e-15 84.3 51 78.4
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 3.6e-15 84.3 52 71.2
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 7.9e-15 83.2 51 76.5
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 1.0e-14 82.8 58 69.0
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 1.0e-14 82.8 50 74.0
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 1.0e-14 82.8 50 74.0
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 1.0e-14 82.8 51 76.5
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 1.0e-14 82.8 51 74.5
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 1.8e-14 82.0 48 79.2
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 1.8e-14 82.0 50 76.0
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 3.0e-14 81.3 51 78.4
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 3.9e-14 80.9 51 76.5
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 3.9e-14 80.9 58 69.0
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 3.9e-14 80.9 49 77.6
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 6.7e-14 80.1 51 76.5
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 8.7e-14 79.7 56 71.4
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 1.1e-13 79.3 51 76.5
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 1.1e-13 79.3 48 77.1
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 1.1e-13 79.3 51 74.5
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 1.5e-13 79.0 51 74.5
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.5e-13 79.0 51 72.5
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.5e-13 79.0 51 72.5
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 1.9e-13 78.6 48 75.0
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 1.9e-13 78.6 47 78.7
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 1.9e-13 78.6 51 74.5
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 2.5e-13 78.2 51 72.5
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 2.5e-13 78.2 56 71.4
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 3.3e-13 77.8 53 75.5
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 3.3e-13 77.8 58 65.5
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 5.7e-13 77.0 50 72.0
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 5.7e-13 77.0 48 75.0
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 5.7e-13 77.0 51 70.6
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 5.7e-13 77.0 58 65.5
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 5.7e-13 77.0 58 65.5
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 7.4e-13 76.6 53 67.9
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 7.4e-13 76.6 50 72.0
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 7.4e-13 76.6 45 80.0
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 9.7e-13 76.3 40 85.0
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 3.7e-12 74.3 48 72.9
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 3.7e-12 74.3 49 75.5
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 3.7e-12 74.3 45 77.8
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 6.3e-12 73.6 45 77.8
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 6.3e-12 73.6 58 62.1
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 8.2e-12 73.2 44 77.3
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 1.1e-11 72.8 46 71.7
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 1.4e-11 72.4 44 75.0
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 1.8e-11 72.0 48 75.0
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 5.3e-11 70.5 60 56.7
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 9.1e-11 69.7 60 56.7
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 2.6e-10 68.2 43 67.4
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 3.4e-10 67.8 38 81.6
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 3.4e-10 67.8 60 56.7
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 3.4e-10 67.8 54 63.0
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 5.9e-10 67.0 60 56.7
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 2.9e-09 64.7 48 62.5
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 8.5e-09 63.2 45 68.9
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 4.2e-08 60.8 41 68.3
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 2.7e-07 58.2 36 72.2
Pp3c4_4750 Physcomitrium patens HOM05D008240 ORTHO05D010333 3.0e-06 54.7 41 58.5
Mapoly0108s0016 Marchantia polymorpha HOM05D008240 ORTHO05D010333 3.9e-06 54.3 37 64.9
TWI59G1460 Tripterygium wilfordii HOM05D011433 ORTHO05D013366 6.7e-06 53.5 49 55.1


User provided reference genes

Program Settings