Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.7e-162 575.9 273 100.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 7.9e-128 460.7 273 79.1
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.5e-126 456.4 273 78.0
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.7e-126 454.5 267 80.9
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.7e-126 454.5 273 79.5
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.6e-125 453.0 271 78.6
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.2e-125 452.6 279 75.6
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 4.8e-125 451.4 272 77.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 8.2e-125 450.7 273 78.8
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.4e-124 449.9 273 78.4
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.8e-124 449.5 273 78.8
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.4e-124 449.1 273 77.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 4.1e-124 448.4 272 78.3
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.1e-124 448.4 273 76.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 6.9e-124 447.6 272 77.9
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.6e-123 445.7 273 77.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.4e-123 445.3 273 77.7
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 7.7e-123 444.1 272 77.2
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 2.9e-122 442.2 273 76.6
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 2.9e-122 442.2 274 76.6
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.8e-122 441.8 272 77.2
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 5.0e-122 441.4 274 76.3
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.5e-122 440.7 273 75.8
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.5e-122 440.7 278 74.8
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.9e-121 439.5 273 75.8
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 3.2e-121 438.7 273 76.2
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.2e-121 438.3 272 76.1
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.2e-121 438.3 273 76.6
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 7.2e-121 437.6 267 77.2
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.4e-121 437.2 274 74.8
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.6e-120 436.4 268 75.4
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.1e-120 434.5 273 74.0
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.1e-120 434.5 273 74.0
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 7.9e-120 434.1 266 74.4
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 7.9e-120 434.1 291 72.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 7.9e-120 434.1 273 75.8
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.0e-119 433.7 266 75.6
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 3.0e-119 432.2 268 73.9
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.9e-119 431.8 285 73.3
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 6.7e-119 431.0 284 71.5
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 8.8e-119 430.6 274 74.5
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.1e-118 430.3 268 76.5
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.3e-118 428.3 273 74.7
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 9.7e-118 427.2 272 74.3
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.7e-117 426.4 273 74.4
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.8e-117 425.6 267 74.5
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 4.8e-117 424.9 268 73.5
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 8.2e-117 424.1 273 74.4
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 6.9e-116 421.0 270 73.7
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 6.9e-116 421.0 273 74.7
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.2e-115 420.2 267 73.4
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.2e-115 420.2 273 73.3
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.5e-115 419.9 267 77.5
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.2e-114 416.0 267 72.3
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 3.8e-114 415.2 272 70.6
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 5.5e-113 411.4 268 71.3
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.2e-112 410.2 280 69.3
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 2.7e-112 409.1 272 68.8
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.6e-112 408.7 269 69.9
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 6.1e-112 407.9 272 70.6
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 6.1e-112 407.9 268 71.3
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 7.9e-112 407.5 267 70.0
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.4e-111 406.8 267 72.3
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 3.0e-111 405.6 281 69.0
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 3.9e-111 405.2 273 69.6
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 5.1e-111 404.8 272 69.9
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 8.8e-111 404.1 278 70.1
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.5e-110 403.3 270 70.7
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.0e-110 402.9 272 69.5
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.6e-110 402.5 268 70.5
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 3.3e-110 402.1 269 70.3
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 4.4e-110 401.7 272 69.5
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 4.4e-110 401.7 272 70.2
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 9.7e-110 400.6 268 70.1
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 9.7e-110 400.6 263 70.0
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.7e-109 399.8 272 69.9
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.7e-109 398.7 264 70.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.7e-109 398.7 267 70.0
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 8.2e-109 397.5 273 68.9
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-108 397.1 272 68.4
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.4e-108 396.0 268 68.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 5.3e-108 394.8 271 70.1
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 5.3e-108 394.8 268 68.3
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 7.0e-108 394.4 264 70.5
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 9.1e-108 394.0 283 66.1
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.2e-107 393.7 267 68.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.6e-107 392.5 272 68.4
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.6e-107 392.5 272 69.1
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 2.6e-107 392.5 268 69.8
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 4.5e-107 391.7 273 69.6
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.5e-107 391.7 268 67.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 5.9e-107 391.3 268 68.7
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 2.2e-106 389.4 273 66.7
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.9e-106 389.0 242 75.6
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 2.9e-106 389.0 273 66.3
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.4e-105 386.7 272 66.9
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.4e-105 386.7 272 67.3
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.9e-105 386.3 279 65.9
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.5e-105 386.0 270 67.4
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.5e-105 386.0 265 68.3
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 6.1e-104 381.3 275 69.5
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.5e-102 376.7 267 66.3
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.3e-102 375.6 272 66.5
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 5.7e-102 374.8 271 66.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 9.7e-102 374.0 237 75.9
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.3e-101 373.6 277 65.0
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 7.0e-100 367.9 299 61.5
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.5e-99 365.2 271 64.2
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.9e-98 362.5 270 63.0
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.1e-97 360.5 314 58.6
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.2e-97 359.0 235 72.8
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.3e-95 352.8 268 67.5
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.0e-94 349.7 328 55.5
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.3e-94 349.0 328 55.5
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.7e-93 346.7 278 63.3
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.6e-91 340.1 236 66.9
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.7e-90 336.7 263 60.8
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.5e-89 331.6 249 65.1
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 4.7e-88 328.6 268 61.9
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.2e-86 323.9 268 58.2
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 3.7e-85 318.9 287 55.1
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.2e-81 304.7 268 57.8
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.6e-80 303.5 301 52.5
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.7e-80 302.0 268 57.1
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 8.0e-80 301.2 301 52.2
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.4e-79 300.4 263 53.6
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 3.0e-79 299.3 268 55.2
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 8.9e-79 297.7 263 51.7
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.8e-77 292.7 277 54.9
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 4.1e-76 288.9 192 72.4
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 9.2e-76 287.7 272 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.6e-75 287.0 267 52.4
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.6e-72 276.9 272 50.7
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 8.0e-72 274.6 270 51.5
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.8e-71 271.6 186 68.3
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.2e-67 260.8 323 44.3
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 1.2e-67 260.8 267 49.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.6e-67 260.4 145 82.8
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 8.6e-66 254.6 145 80.7
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.5e-65 253.8 140 84.3
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 3.6e-64 249.2 265 45.7
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 6.2e-64 248.4 140 80.0
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 6.8e-63 245.0 140 79.3
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.5e-62 243.8 193 61.7
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-61 240.7 237 53.6
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.7e-61 239.2 138 79.0
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.4e-61 238.4 195 64.1
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 8.3e-61 238.0 195 63.6
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 7.1e-60 235.0 138 77.5
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 5.1e-58 228.8 485 33.0
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 8.6e-58 228.0 144 71.5
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.6e-56 223.8 141 73.0
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.4e-55 220.7 140 73.6
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.6e-48 197.2 115 77.4
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.8e-47 193.7 275 40.7
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.2e-46 191.0 114 76.3
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.3e-45 187.6 263 38.4
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.9e-44 183.7 139 64.7
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 9.3e-44 181.4 115 72.2
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.6e-40 170.6 114 66.7
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.1e-40 170.2 106 73.6
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.4e-39 167.5 349 30.9
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 6.9e-39 165.2 111 68.5
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.9e-36 157.1 94 75.5
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.6e-35 154.1 86 82.6
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.7e-35 153.3 191 46.6
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.9e-33 147.1 83 77.1
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.9e-33 147.1 83 77.1
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.6e-32 142.9 117 53.8
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 4.0e-31 139.4 143 51.7
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.6e-27 125.9 90 61.1
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.1e-25 121.3 77 70.1
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.3e-21 107.8 75 65.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.8e-18 97.4 76 59.2
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 4.8e-16 89.4 56 71.4
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.4e-15 87.0 51 76.5
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 1.4e-12 77.8 51 68.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 9.7e-09 65.1 45 66.7
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 6.3e-08 62.4 43 67.4


User provided reference genes

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