Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 0.0e+00 1453.3 744 100.0
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 2.9e-257 892.1 783 60.7
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 2.5e-237 825.9 781 56.3
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 9.1e-219 764.2 784 52.8
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 1.2e-218 763.8 786 52.8
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 2.0e-218 763.1 742 54.4
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.9e-217 759.2 784 52.8
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 8.0e-215 751.1 775 51.7
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 5.2e-214 748.4 792 52.0
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 6.8e-214 748.0 773 53.0
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 8.8e-214 747.7 780 53.5
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 5.7e-213 745.0 780 53.6
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 5.7e-213 745.0 790 52.3
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 1.7e-212 743.4 778 51.9
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 6.5e-209 731.5 774 51.8
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 8.5e-209 731.1 776 51.7
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 1.9e-208 729.9 778 50.6
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.5e-208 729.6 775 51.1
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 7.2e-208 728.0 847 49.6
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 9.4e-208 727.6 789 51.5
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.4e-206 723.8 789 51.0
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 2.3e-206 723.0 835 48.5
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 5.7e-205 718.4 795 50.3
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 9.8e-205 717.6 791 50.7
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 3.7e-204 715.7 777 51.0
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 2.4e-203 713.0 789 49.4
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 3.1e-203 712.6 785 50.2
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 1.6e-202 710.3 781 50.2
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 1.6e-202 710.3 777 51.1
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 1.6e-202 710.3 788 49.6
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 2.7e-202 709.5 754 52.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 5.9e-202 708.4 780 50.3
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 1.7e-201 706.8 780 49.9
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 2.9e-201 706.1 750 50.7
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 2.5e-200 703.0 785 48.8
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.2e-199 700.7 784 50.0
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.4e-198 697.2 649 57.8
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 1.7e-196 690.3 787 48.7
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.4e-195 687.2 738 50.9
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.8e-195 686.8 774 48.4
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 2.4e-195 686.4 769 49.5
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 4.1e-195 685.6 785 49.0
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 3.5e-194 682.6 778 49.2
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 3.5e-194 682.6 773 48.9
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 3.5e-194 682.6 784 48.0
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 4.5e-194 682.2 775 48.5
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 7.8e-194 681.4 786 49.2
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 1.5e-192 677.2 797 47.9
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 1.5e-192 677.2 775 48.5
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 7.3e-192 674.9 778 48.2
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 2.8e-191 672.9 785 48.7
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 2.8e-191 672.9 728 52.1
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 3.6e-191 672.5 781 48.8
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 1.8e-190 670.2 729 52.3
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 6.8e-190 668.3 763 48.0
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 1.5e-189 667.2 756 49.5
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 2.6e-189 666.4 758 48.8
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 2.9e-188 662.9 759 48.5
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 1.9e-187 660.2 778 47.3
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 7.0e-187 658.3 761 47.3
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 4.6e-186 655.6 764 48.2
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 7.8e-186 654.8 778 46.8
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 1.3e-185 654.1 753 47.0
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.9e-184 650.2 759 48.5
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 7.3e-184 648.3 756 47.4
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 7.3e-184 648.3 761 47.4
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 2.1e-183 646.7 755 47.8
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 2.1e-183 646.7 774 46.4
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 8.0e-183 644.8 755 47.3
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.1e-182 644.4 729 48.0
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 2.3e-182 643.3 752 46.9
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 2.3e-182 643.3 780 46.2
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 3.1e-182 642.9 761 46.6
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 3.7e-180 636.0 760 46.6
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 1.9e-179 633.6 760 45.8
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 4.1e-179 632.5 761 46.8
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 6.8e-174 615.1 713 48.8
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.7e-169 600.5 520 58.7
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 7.3e-168 595.1 781 48.9
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 1.2e-165 587.8 771 43.1
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 7.6e-165 585.1 778 44.6
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 8.4e-164 581.6 781 44.8
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 7.8e-162 575.1 758 44.5
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 1.5e-157 560.8 786 42.9
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 2.0e-157 560.5 749 43.4
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.6e-154 550.8 751 45.4
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 8.1e-151 538.5 731 44.0
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 1.3e-148 531.2 782 41.8
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 4.6e-146 522.7 749 42.5
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.1e-126 458.4 830 37.0
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 1.4e-123 448.0 454 51.1
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 5.7e-120 436.0 594 42.3
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 1.8e-110 404.4 433 48.5
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 8.0e-106 389.0 352 56.0
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 3.3e-104 383.6 368 53.5
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 1.3e-100 371.7 377 52.8
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 8.5e-92 342.4 428 46.5
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 1.0e-89 335.5 851 32.4
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 7.0e-86 322.8 836 30.7
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.0e-86 322.8 464 41.4
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 4.7e-74 283.5 853 30.0
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.1e-59 235.7 266 53.0
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 1.9e-59 235.0 263 54.0
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.1e-57 229.2 727 28.7
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 4.9e-55 220.3 260 48.5
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 5.8e-48 196.8 214 50.9
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-42 178.7 181 53.6
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.3e-36 159.1 110 70.9
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-31 142.5 96 70.8
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 4.9e-31 140.6 181 42.5
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.1e-25 121.3 150 47.3
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 3.1e-25 121.3 211 37.0
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-23 113.6 300 29.3
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 8.4e-23 113.2 77 64.9
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.1e-22 112.8 151 43.0
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 2.5e-19 101.7 138 42.0
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.1e-13 80.5 63 65.1
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.1e-13 80.5 63 65.1
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 8.7e-12 76.6 63 63.5
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.3e-10 72.8 58 67.2
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 2.2e-10 72.0 67 56.7
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 2.8e-10 71.6 79 53.2
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 1.1e-09 69.7 205 28.8
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-09 68.9 43 60.5
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 3.1e-09 68.2 53 60.4
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 5.3e-09 67.4 56 66.1
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 3.4e-08 64.7 53 56.6
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 8.5e-07 60.1 29 79.3
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 2.5e-06 58.5 63 49.2
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 7.2e-06 57.0 40 67.5


User provided reference genes

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