Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu044386.2 Olea europaea HOM05D005032 ORTHO05D006268 1.3e-157 559.7 284 100.0
MSTRG.2252 Avicennia marina HOM05D005032 ORTHO05D006268 3.2e-71 272.7 466 41.0
Migut.E00317 Erythranthe guttata HOM05D005032 ORTHO05D006268 4.1e-71 272.3 464 40.7
Dinv21116 Davidia involucrata HOM05D005032 ORTHO05D006268 5.6e-68 261.9 468 41.0
Prupe.1G307200 Prunus persica HOM05D005032 ORTHO05D006268 1.1e-66 257.7 426 41.5
DCAR_026721 Daucus carota HOM05D005032 ORTHO05D006268 4.0e-66 255.8 468 38.9
Duzib248G0180 Durio zibethinus HOM05D005032 ORTHO05D006268 1.5e-65 253.8 411 43.1
TAR374G1139 Trochodendron aralioides HOM05D005032 ORTHO05D006268 7.6e-65 251.5 464 39.2
Atru.chr11.1329 Acer truncatum HOM05D005032 ORTHO05D006268 9.9e-65 251.1 468 38.7
Actinidia13669 Actinidia chinensis HOM05D005032 ORTHO05D006268 3.8e-64 249.2 469 38.8
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 3.8e-64 249.2 469 38.4
CANSAT64G1793 Cannabis sativa HOM05D005032 ORTHO05D006268 8.4e-64 248.1 469 39.0
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 1.1e-63 247.7 465 39.8
QL01p044542 Quercus lobata HOM05D005032 ORTHO05D006268 1.4e-63 247.3 458 38.4
GSVIVG01011930001 Vitis vinifera HOM05D005032 ORTHO05D006268 1.4e-63 247.3 467 39.4
Ciclev10031322m.g Citrus clementina HOM05D005032 ORTHO05D006268 1.9e-63 246.9 468 38.9
Nn3g17775 Nelumbo nucifera HOM05D005032 ORTHO05D006268 2.4e-63 246.5 468 39.5
Cfa018616 Carpinus fangiana HOM05D005032 ORTHO05D006268 3.2e-63 246.1 468 38.5
Thecc.02G359100 Theobroma cacao HOM05D005032 ORTHO05D006268 4.2e-63 245.7 467 39.2
Cc00_g17470 Coffea canephora HOM05D005032 ORTHO05D006268 5.4e-63 245.4 467 38.8
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 1.2e-62 244.2 470 38.9
FAN07G0299 Fragaria x ananassa HOM05D005032 ORTHO05D006268 2.1e-62 243.4 458 38.2
FAN22G0537 Fragaria x ananassa HOM05D005032 ORTHO05D006268 2.1e-62 243.4 458 38.2
RcHm_v2.0_Chr4g0435621 Rosa chinensis HOM05D005032 ORTHO05D006268 2.1e-62 243.4 458 38.6
Glyma.10G276200 Glycine max HOM05D005032 ORTHO05D006268 3.5e-62 242.7 468 38.2
FvH4_4g27760 Fragaria vesca HOM05D005032 ORTHO05D006268 4.6e-62 242.3 458 38.2
FAN12G2852 Fragaria x ananassa HOM05D005032 ORTHO05D006268 4.6e-62 242.3 458 38.2
Eucgr.B03034 Eucalyptus grandis HOM05D005032 ORTHO05D006268 6.0e-62 241.9 468 38.7
Glyma.20G113500 Glycine max HOM05D005032 ORTHO05D006268 7.8e-62 241.5 468 37.8
CAN.G656.42 Capsicum annuum HOM05D005032 ORTHO05D006268 1.7e-61 240.4 463 37.6
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 2.3e-61 240.0 463 38.4
Medtr1g111330 Medicago truncatula HOM05D005032 ORTHO05D006268 3.0e-61 239.6 467 38.1
Ca_11190_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 5.1e-61 238.8 470 37.9
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 6.6e-61 238.4 470 38.5
Lj6A762T40 Lonicera japonica HOM05D005032 ORTHO05D006268 6.6e-61 238.4 496 36.7
Lj6A763T35 Lonicera japonica HOM05D005032 ORTHO05D006268 6.6e-61 238.4 496 36.7
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 6.6e-61 238.4 470 38.1
Lalb_Chr02g0146101 Lupinus albus HOM05D005032 ORTHO05D006268 8.7e-61 238.0 455 38.7
Phvul.007G025400 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 8.7e-61 238.0 460 38.3
Lj5g0015640 Lotus japonicus HOM05D005032 ORTHO05D006268 1.1e-60 237.7 467 37.5
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 1.5e-60 237.3 468 37.6
MD16G1046200 Malus domestica HOM05D005032 ORTHO05D006268 1.5e-60 237.3 468 37.4
Potri.008G118200 Populus trichocarpa HOM05D005032 ORTHO05D006268 1.5e-60 237.3 471 36.9
VMungo0720G2532 Vigna mungo HOM05D005032 ORTHO05D006268 1.9e-60 236.9 463 37.8
Haze_17453 Corylus avellana HOM05D005032 ORTHO05D006268 2.5e-60 236.5 471 37.2
Gorai.013G081000 Gossypium raimondii HOM05D005032 ORTHO05D006268 5.6e-60 235.3 462 38.5
CiPaw.15G004700 Carya illinoinensis HOM05D005032 ORTHO05D006268 7.3e-60 235.0 465 37.0
Sabra08G0089600 Salix brachista HOM05D005032 ORTHO05D006268 7.3e-60 235.0 471 37.2
Sc04g0004960 Simmondsia chinensis HOM05D005032 ORTHO05D006268 9.6e-60 234.6 462 37.9
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 9.6e-60 234.6 468 36.8
arahy.Tifrunner.gnm1.ann1.HPX6PX Arachis hypogaea HOM05D005032 ORTHO05D006268 1.3e-59 234.2 457 37.0
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 1.3e-59 234.2 468 37.2
Lalb_Chr17g0341981 Lupinus albus HOM05D005032 ORTHO05D006268 1.3e-59 234.2 466 37.3
Gorai.008G185100 Gossypium raimondii HOM05D005032 ORTHO05D006268 1.6e-59 233.8 463 38.4
Ah.03g137830 Amaranthus hybridus HOM05D005032 ORTHO05D006268 2.1e-59 233.4 454 38.3
CsaV3_5G034080 Cucumis sativus L. HOM05D005032 ORTHO05D006268 2.1e-59 233.4 465 36.6
Glyma.01G084500 Glycine max HOM05D005032 ORTHO05D006268 2.1e-59 233.4 454 38.1
Sed0015336 Sechium edule HOM05D005032 ORTHO05D006268 2.1e-59 233.4 464 36.6
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 2.1e-59 233.4 470 37.4
Gohir.A12G169300 Gossypium hirsutum HOM05D005032 ORTHO05D006268 2.8e-59 233.0 463 38.4
Psat6g229600 Pisum sativum HOM05D005032 ORTHO05D006268 2.8e-59 233.0 469 37.1
Medtr5g054780 Medicago truncatula HOM05D005032 ORTHO05D006268 3.6e-59 232.6 462 37.2
arahy.Tifrunner.gnm1.ann1.WF5P9Q Arachis hypogaea HOM05D005032 ORTHO05D006268 6.2e-59 231.9 457 36.8
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 6.2e-59 231.9 462 36.6
ClCG05G022930 Citrullus lanatus HOM05D005032 ORTHO05D006268 8.1e-59 231.5 465 36.3
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 1.1e-58 231.1 466 37.1
Gohir.D13G070800 Gossypium hirsutum HOM05D005032 ORTHO05D006268 1.1e-58 231.1 452 38.3
MD13G1044800 Malus domestica HOM05D005032 ORTHO05D006268 1.1e-58 231.1 465 37.2
TPR.G38289 Trifolium pratense HOM05D005032 ORTHO05D006268 1.4e-58 230.7 453 37.7
Hund25090 Selenicereus undatus HOM05D005032 ORTHO05D006268 5.3e-58 228.8 453 37.7
PSO782G1090 Papaver somniferum HOM05D005032 ORTHO05D006268 6.9e-58 228.4 465 36.8
Potri.010G128100 Populus trichocarpa HOM05D005032 ORTHO05D006268 9.0e-58 228.0 471 35.9
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 9.0e-58 228.0 458 37.3
A08p27010 Brassica napus HOM05D005032 ORTHO05D006268 1.2e-57 227.6 454 36.6
C03p72880 Brassica napus HOM05D005032 ORTHO05D006268 1.2e-57 227.6 454 36.6
BolC3t19586H Brassica oleracea HOM05D005032 ORTHO05D006268 1.2e-57 227.6 454 36.6
BraA08t34647Z Brassica rapa HOM05D005032 ORTHO05D006268 1.2e-57 227.6 454 36.6
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 1.5e-57 227.3 462 37.0
Nitab4.5_0000672g0140 Nicotiana tabacum HOM05D005032 ORTHO05D006268 1.5e-57 227.3 454 37.7
Sopen05g005490 Solanum pennellii HOM05D005032 ORTHO05D006268 2.6e-57 226.5 462 36.6
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 3.4e-57 226.1 453 37.3
Thhalv10007483m.g Eutrema salsugineum HOM05D005032 ORTHO05D006268 3.4e-57 226.1 454 36.3
Solyc05g009670.3 Solanum lycopersicum HOM05D005032 ORTHO05D006268 3.4e-57 226.1 462 36.6
PGSC0003DMG402012961 Solanum tuberosum HOM05D005032 ORTHO05D006268 3.4e-57 226.1 462 35.9
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 4.4e-57 225.7 448 36.6
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 4.4e-57 225.7 463 37.1
Gohir.A13G053540 Gossypium hirsutum HOM05D005032 ORTHO05D006268 5.8e-57 225.3 448 38.6
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 1.7e-56 223.8 453 37.1
Aqoxy3G03931 Aquilegia oxysepala HOM05D005032 ORTHO05D006268 2.2e-56 223.4 471 36.5
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 2.2e-56 223.4 454 35.9
ATR0097G002 Amborella trichopoda HOM05D005032 ORTHO05D006268 2.9e-56 223.0 469 36.0
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 2.9e-56 223.0 454 36.1
Psat2g101480 Pisum sativum HOM05D005032 ORTHO05D006268 2.9e-56 223.0 467 36.8
Sp1g22710 Schrenkiella parvula HOM05D005032 ORTHO05D006268 2.9e-56 223.0 454 36.1
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 6.4e-56 221.9 454 35.9
Peaxi162Scf00380g00811 Petunia axillaris HOM05D005032 ORTHO05D006268 6.4e-56 221.9 514 36.0
TPR.G26307 Trifolium pratense HOM05D005032 ORTHO05D006268 6.4e-56 221.9 474 36.9
HPP92_006145 Vanilla planifolia HOM05D005032 ORTHO05D006268 6.4e-56 221.9 434 37.8
Lj2g0024967 Lotus japonicus HOM05D005032 ORTHO05D006268 8.4e-56 221.5 457 36.1
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 7.1e-55 218.4 457 35.4
Manes.14G099000 Manihot esculenta HOM05D005032 ORTHO05D006268 9.3e-55 218.0 417 37.9
CDE05G1095 Ceratophyllum demersum HOM05D005032 ORTHO05D006268 1.6e-54 217.2 466 34.8
Aa31LG7G9000 Aethionema arabicum HOM05D005032 ORTHO05D006268 4.6e-54 215.7 455 35.2
Nitab4.5_0003642g0010 Nicotiana tabacum HOM05D005032 ORTHO05D006268 1.7e-53 213.8 473 36.8
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 2.3e-53 213.4 461 36.0
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 3.0e-53 213.0 459 35.9
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 1.9e-52 210.3 468 35.9
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 9.6e-52 208.0 468 35.7
PSO063G0757 Papaver somniferum HOM05D005032 ORTHO05D006268 9.9e-49 198.0 434 35.5
Sabra10G0097300 Salix brachista HOM05D005032 ORTHO05D006268 3.2e-47 193.0 508 32.3
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 3.2e-47 193.0 453 33.8
CSS0010323 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-46 190.7 163 68.1
CSS0024978 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-46 190.7 163 68.1
MBI13_g09687_MAGBIO Magnolia biondii HOM05D005032 ORTHO05D006268 4.3e-44 182.6 162 64.8
CSS0031703 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-43 180.6 391 35.0
CSS0042031 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-43 180.6 391 35.0
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 8.1e-43 178.3 487 31.6
Cpa.g.sc1.204 Carica papaya HOM05D005032 ORTHO05D006268 1.4e-42 177.6 151 66.9
Os02g0580100 Oryza sativa ssp. japonica HOM05D005032 ORTHO05D006268 4.0e-42 176.0 485 31.5
Lsat_1_v5_gn_3_59981 Lactuca sativa HOM05D005032 ORTHO05D006268 9.0e-42 174.9 391 34.5
BcaC01g01701 Brassica carinata HOM05D005032 ORTHO05D006268 7.6e-41 171.8 148 64.9
BcaB03g12017 Brassica carinata HOM05D005032 ORTHO05D006268 1.0e-40 171.4 148 64.2
SMO165G0124 Selaginella moellendorffii HOM05D005032 ORTHO05D006268 1.1e-39 167.9 445 31.5
Mapoly0004s0207 Marchantia polymorpha HOM05D005032 ORTHO05D006268 2.3e-37 160.2 461 29.3
MELO3C012225.2 Cucumis melo HOM05D005032 ORTHO05D006268 3.9e-37 159.5 388 32.0
Medtr4g108910 Medicago truncatula HOM05D005032 ORTHO05D006268 2.1e-30 137.1 150 57.3
Actinidia38384 Actinidia chinensis HOM05D005032 ORTHO05D006268 1.0e-29 134.8 382 33.8
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 1.0e-24 118.2 143 47.6
COL.COLO4_07886 Corchorus olitorius HOM05D005032 ORTHO05D006268 6.5e-24 115.5 179 41.3
BcaC01g01716 Brassica carinata HOM05D005032 ORTHO05D006268 3.2e-23 113.2 110 52.7
Cpa.g.sc1.205 Carica papaya HOM05D005032 ORTHO05D006268 2.1e-22 110.5 110 53.6
BcaB03g14048 Brassica carinata HOM05D005032 ORTHO05D006268 5.7e-20 102.4 146 47.9
CSS0041246 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.1e-14 84.0 69 65.2
CSS0041536 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.1e-14 84.0 69 65.2
Psat0ss2010g0040 Pisum sativum HOM05D002683 ORTHO05D007757 7.9e-14 82.0 79 55.7
Psat4g141120 Pisum sativum HOM05D005032 ORTHO05D006268 1.8e-13 80.9 79 54.4
Psat2g182600 Pisum sativum HOM05D002751 ORTHO05D003005 2.3e-13 80.5 59 67.8
CSS0048629 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D006268 3.0e-13 80.1 82 51.2
Psat7g191480 Pisum sativum HOM05D005032 ORTHO05D006268 1.8e-10 70.9 85 47.1
Mapoly0029s0041 Marchantia polymorpha HOM05D002512 ORTHO05D002660 2.2e-08 63.9 151 30.5
Pp3c19_5950 Physcomitrium patens HOM05D002512 ORTHO05D002660 4.2e-07 59.7 143 29.4
Pp3c21_1180 Physcomitrium patens HOM05D002512 ORTHO05D002660 7.2e-07 58.9 148 30.4
Mapoly0061s0040 Marchantia polymorpha HOM05D002512 ORTHO05D002660 2.1e-06 57.4 120 30.0
Mapoly0285s0002 Marchantia polymorpha HOM05D002512 ORTHO05D002660 2.1e-06 57.4 120 30.0
Pp3c18_21450 Physcomitrium patens HOM05D002512 ORTHO05D002660 2.1e-06 57.4 187 31.0


User provided reference genes

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