Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu044187.2 Olea europaea HOM05D002529 ORTHO05D002664 2.5e-65 251.9 122 100.0
Dinv05119 Davidia involucrata HOM05D002529 ORTHO05D002664 1.1e-12 77.0 66 56.1
Duzib212G0919 Durio zibethinus HOM05D002529 ORTHO05D002664 2.4e-12 75.9 71 56.3
CiPaw.01G167200 Carya illinoinensis HOM05D002529 ORTHO05D002664 3.2e-12 75.5 60 60.0
Hund12122 Selenicereus undatus HOM05D002529 ORTHO05D002664 4.2e-12 75.1 50 66.0
vmacro15348 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 4.2e-12 75.1 59 61.0
TWI09G0630 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 5.4e-12 74.7 75 52.0
Dinv14000 Davidia involucrata HOM05D002529 ORTHO05D002664 7.1e-12 74.3 71 57.7
Manes.15G029600 Manihot esculenta HOM05D002529 ORTHO05D002664 1.6e-11 73.2 60 56.7
Thecc.04G233300 Theobroma cacao HOM05D002529 ORTHO05D002664 1.6e-11 73.2 71 53.5
MSTRG.21859 Avicennia marina HOM05D002529 ORTHO05D002664 2.1e-11 72.8 48 66.7
Atru.chr4.2452 Acer truncatum HOM05D002529 ORTHO05D002664 2.7e-11 72.4 48 66.7
Potri.010G086800 Populus trichocarpa HOM05D002529 ORTHO05D002664 4.6e-11 71.6 52 63.5
Sabra10G0056700 Salix brachista HOM05D002529 ORTHO05D002664 4.6e-11 71.6 52 63.5
Nn6g34079 Nelumbo nucifera HOM05D002529 ORTHO05D002664 7.9e-11 70.9 49 67.3
Gohir.A09G056400 Gossypium hirsutum HOM05D002529 ORTHO05D002664 1.0e-10 70.5 79 49.4
TAR636G3415 Trochodendron aralioides HOM05D002529 ORTHO05D002664 1.0e-10 70.5 72 55.6
Actinidia33839 Actinidia chinensis HOM05D002529 ORTHO05D002664 1.3e-10 70.1 80 51.2
Cc03_g03880 Coffea canephora HOM05D002529 ORTHO05D002664 1.8e-10 69.7 55 60.0
SGA_v2.0_scaffold522G52708 Striga asiatica HOM05D002529 ORTHO05D002664 1.8e-10 69.7 59 55.9
CSS0013639 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 2.3e-10 69.3 47 70.2
MD16G1195200 Malus domestica HOM05D002529 ORTHO05D002664 2.3e-10 69.3 73 46.6
PSO210G6081 Papaver somniferum HOM05D002529 ORTHO05D002664 2.3e-10 69.3 72 48.6
MSTRG.5850 Avicennia marina HOM05D002529 ORTHO05D002664 5.1e-10 68.2 64 51.6
Migut.N00189 Erythranthe guttata HOM05D002529 ORTHO05D002664 5.1e-10 68.2 50 64.0
Medtr5g006380 Medicago truncatula HOM05D002529 ORTHO05D002664 5.1e-10 68.2 50 62.0
PSO832G3905 Papaver somniferum HOM05D002529 ORTHO05D002664 5.1e-10 68.2 72 47.2
Rhsim05G0150200 Rhododendron simsii HOM05D002529 ORTHO05D002664 5.1e-10 68.2 64 53.1
CSS0050505 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 6.7e-10 67.8 75 49.3
Dinv02599 Davidia involucrata HOM05D002529 ORTHO05D002664 6.7e-10 67.8 81 45.7
Glyma.01G237600 Glycine max HOM05D002529 ORTHO05D002664 6.7e-10 67.8 51 62.7
Gohir.D09G055800 Gossypium hirsutum HOM05D002529 ORTHO05D002664 8.7e-10 67.4 60 56.7
Gorai.006G068900 Gossypium raimondii HOM05D002529 ORTHO05D002664 8.7e-10 67.4 60 56.7
Phvul.002G044900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 1.1e-09 67.0 51 58.8
Psat4g210240 Pisum sativum HOM05D002529 ORTHO05D002664 1.1e-09 67.0 72 45.8
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 1.5e-09 66.6 50 56.0
Nn5g28120 Nelumbo nucifera HOM05D002529 ORTHO05D002664 1.5e-09 66.6 47 63.8
unitig_578.g16363 Utricularia gibba HOM05D000550 ORTHO05D000400 1.5e-09 66.6 64 51.6
DCAR_024166 Daucus carota HOM05D002529 ORTHO05D002664 1.9e-09 66.2 69 49.3
CSS0043802 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 2.5e-09 65.9 75 48.0
COL.COLO4_21488 Corchorus olitorius HOM05D002529 ORTHO05D002664 2.5e-09 65.9 50 58.0
Nn1g02343 Nelumbo nucifera HOM05D002529 ORTHO05D002664 3.3e-09 65.5 47 63.8
Rhsim02G0021700 Rhododendron simsii HOM05D002529 ORTHO05D002664 3.3e-09 65.5 49 63.3
GSVIVG01017990001 Vitis vinifera HOM05D002529 ORTHO05D002664 3.3e-09 65.5 50 60.0
CDE02G3900 Ceratophyllum demersum HOM05D002529 ORTHO05D002664 5.6e-09 64.7 45 64.4
Prupe.1G015200 Prunus persica HOM05D002529 ORTHO05D002664 5.6e-09 64.7 54 51.9
TPR.G37906 Trifolium pratense HOM05D003253 ORTHO05D002664 7.4e-09 64.3 50 58.0
Aqoxy3G00616 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 9.6e-09 63.9 50 64.0
ClCG05G005150 Citrullus lanatus HOM05D002529 ORTHO05D002664 9.6e-09 63.9 71 47.9
Sed0006923 Sechium edule HOM05D002529 ORTHO05D002664 9.6e-09 63.9 71 49.3
Aqoxy1G03767 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 1.3e-08 63.5 50 64.0
Migut.G00316 Erythranthe guttata HOM05D002529 ORTHO05D002664 1.3e-08 63.5 62 51.6
RcHm_v2.0_Chr4g0416031 Rosa chinensis HOM05D002529 ORTHO05D002664 1.3e-08 63.5 81 40.7
PGSC0003DMG400027508 Solanum tuberosum HOM05D002529 ORTHO05D002664 1.3e-08 63.5 64 50.0
Ciclev10006772m.g Citrus clementina HOM05D002529 ORTHO05D002664 1.6e-08 63.2 52 55.8
Sc19g0004090 Simmondsia chinensis HOM05D002529 ORTHO05D002664 1.6e-08 63.2 50 54.0
Solyc01g096760.3 Solanum lycopersicum HOM05D002529 ORTHO05D002664 1.6e-08 63.2 64 48.4
Sopen01g040470 Solanum pennellii HOM05D002529 ORTHO05D002664 1.6e-08 63.2 64 48.4
vmacro19828 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 1.6e-08 63.2 50 58.0
ATR0697G145 Amborella trichopoda HOM05D002529 ORTHO05D002664 2.1e-08 62.8 74 45.9
Prupe.6G337800 Prunus persica HOM05D002529 ORTHO05D002664 2.1e-08 62.8 46 63.0
Ciclev10002511m.g Citrus clementina HOM05D002529 ORTHO05D002664 2.8e-08 62.4 66 50.0
FAN18G2811 Fragaria x ananassa HOM05D002529 ORTHO05D002664 2.8e-08 62.4 50 52.0
Os08g0508600 Oryza sativa ssp. japonica HOM05D002529 ORTHO05D002664 2.8e-08 62.4 49 57.1
Potri.013G035000 Populus trichocarpa HOM05D002529 ORTHO05D002664 3.7e-08 62.0 69 44.9
Prupe.6G025700 Prunus persica HOM05D002529 ORTHO05D002664 3.7e-08 62.0 49 59.2
VMungo1215G1949 Vigna mungo HOM05D002529 ORTHO05D002664 3.7e-08 62.0 86 36.0
Migut.L01786 Erythranthe guttata HOM05D002529 ORTHO05D002664 4.8e-08 61.6 50 60.0
Sabra05G0043300 Salix brachista HOM05D002529 ORTHO05D002664 4.8e-08 61.6 69 44.9
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 4.8e-08 61.6 69 44.9
SMO351G0221 Selaginella moellendorffii HOM05D002529 ORTHO05D002664 4.8e-08 61.6 50 56.0
HanXRQChr07g0200741 Helianthus annuus HOM05D002529 ORTHO05D002664 6.2e-08 61.2 64 43.8
Potri.005G047901 Populus trichocarpa HOM05D002529 ORTHO05D002664 8.1e-08 60.8 69 46.4
Lsat_1_v5_gn_1_56180 Lactuca sativa HOM05D002529 ORTHO05D002664 1.1e-07 60.5 45 57.8
TWI12G0397 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 1.1e-07 60.5 49 57.1
TWI12G0415 Tripterygium wilfordii HOM05D000460 ORTHO05D000333 1.1e-07 60.5 49 57.1
DCAR_018312 Daucus carota HOM05D002529 ORTHO05D002664 1.4e-07 60.1 64 43.8
Lj4g0005583 Lotus japonicus HOM05D002529 ORTHO05D002664 1.4e-07 60.1 58 53.4
RcHm_v2.0_Chr4g0395011 Rosa chinensis HOM05D002529 ORTHO05D002664 1.4e-07 60.1 49 51.0
RcHm_v2.0_Chr5g0025491 Rosa chinensis HOM05D002529 ORTHO05D002664 1.4e-07 60.1 49 51.0
SEGI_20714 Sequoiadendron giganteum HOM05D002529 ORTHO05D002664 1.4e-07 60.1 48 56.2
Actinidia36955 Actinidia chinensis HOM05D002529 ORTHO05D002664 1.8e-07 59.7 51 52.9
Hma1.2p1_0083F.1_g042670 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 1.8e-07 59.7 47 63.8
Lsat_1_v5_gn_2_115920 Lactuca sativa HOM05D002529 ORTHO05D002664 1.8e-07 59.7 45 55.6
Oeu021565.1 Olea europaea HOM05D002529 ORTHO05D002664 1.8e-07 59.7 52 53.8
GSVIVG01021882001 Vitis vinifera HOM05D002529 ORTHO05D002664 1.8e-07 59.7 47 57.4
Aqoxy2G03402 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 2.4e-07 59.3 57 50.9
MELO3C031694.2 Cucumis melo HOM05D002529 ORTHO05D002664 2.4e-07 59.3 54 51.9
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 2.4e-07 59.3 54 51.9
Lalb_Chr09g0319871 Lupinus albus HOM05D002529 ORTHO05D002664 2.4e-07 59.3 52 51.9
MD03G1029600 Malus domestica HOM05D002529 ORTHO05D002664 2.4e-07 59.3 48 56.2
CiPaw.08G178400 Carya illinoinensis HOM05D002529 ORTHO05D002664 3.1e-07 58.9 46 54.3
ClCG11G014280 Citrullus lanatus HOM05D002529 ORTHO05D002664 3.1e-07 58.9 50 54.0
Lj1g0004297 Lotus japonicus HOM05D002529 ORTHO05D002664 3.1e-07 58.9 45 62.2
MELO3C003557.2 Cucumis melo HOM05D002529 ORTHO05D002664 4.0e-07 58.5 53 49.1
ECA238G0509 Erigeron canadensis HOM05D002529 ORTHO05D002664 4.0e-07 58.5 45 53.3
Migut.J01026 Erythranthe guttata HOM05D002529 ORTHO05D002664 4.0e-07 58.5 64 46.9
LjContig00408g0024130 Lotus japonicus HOM05D002529 ORTHO05D002664 4.0e-07 58.5 50 52.0
SGA_v2.0_scaffold31G12908 Striga asiatica HOM05D002529 ORTHO05D002664 4.0e-07 58.5 64 45.3
ATR0730G133 Amborella trichopoda HOM05D002529 ORTHO05D002664 5.3e-07 58.2 74 40.5
arahy.Tifrunner.gnm1.ann1.4HTT8H Arachis hypogaea HOM05D002529 ORTHO05D002664 5.3e-07 58.2 75 45.3
CiPaw.07G007900 Carya illinoinensis HOM05D002529 ORTHO05D002664 5.3e-07 58.2 46 52.2
FvH4_5g30310 Fragaria vesca HOM05D002529 ORTHO05D002664 5.3e-07 58.2 44 54.5
FAN13G2107 Fragaria x ananassa HOM05D002529 ORTHO05D002664 5.3e-07 58.2 44 54.5
RcHm_v2.0_Chr1g0319871 Rosa chinensis HOM05D002529 ORTHO05D002664 5.3e-07 58.2 49 51.0
BraA05t21501Z Brassica rapa HOM05D002529 ORTHO05D002664 6.9e-07 57.8 48 56.2
Peaxi162Scf00220g00009 Petunia axillaris HOM05D002529 ORTHO05D002664 6.9e-07 57.8 50 56.0
QL08p059718 Quercus lobata HOM05D002529 ORTHO05D002664 6.9e-07 57.8 64 45.3
RcHm_v2.0_Chr5g0076411 Rosa chinensis HOM05D002529 ORTHO05D002664 6.9e-07 57.8 45 55.6
SalBow5G1920 Salvia bowleyana HOM05D002529 ORTHO05D002664 6.9e-07 57.8 52 46.2
Sp3g20270 Schrenkiella parvula HOM05D002529 ORTHO05D002664 6.9e-07 57.8 48 56.2
ClCG05G009860 Citrullus lanatus HOM05D002529 ORTHO05D002664 9.0e-07 57.4 50 58.0
MD04G1217800 Malus domestica HOM05D002529 ORTHO05D002664 9.0e-07 57.4 45 57.8
MD12G1235200 Malus domestica HOM05D002529 ORTHO05D002664 9.0e-07 57.4 45 57.8
Manes.08G120700 Manihot esculenta HOM05D002529 ORTHO05D002664 9.0e-07 57.4 46 54.3
SalBow3G3572 Salvia bowleyana HOM05D002529 ORTHO05D002664 9.0e-07 57.4 46 50.0
Atru.chr2.663 Acer truncatum HOM05D002529 ORTHO05D002664 1.2e-06 57.0 74 37.8
C05p40740 Brassica napus HOM05D002529 ORTHO05D002664 1.2e-06 57.0 52 51.9
BolC5t32819H Brassica oleracea HOM05D002529 ORTHO05D002664 1.2e-06 57.0 52 51.9
CAN.G134.40 Capsicum annuum HOM05D002529 ORTHO05D002664 1.2e-06 57.0 64 43.8
CsaV3_3G047670 Cucumis sativus L. HOM05D002529 ORTHO05D002664 1.2e-06 57.0 53 47.2
Eucgr.H04397 Eucalyptus grandis HOM05D002529 ORTHO05D002664 1.2e-06 57.0 46 47.8
Psat2g156040 Pisum sativum HOM05D002529 ORTHO05D002664 1.2e-06 57.0 45 57.8
Sed0025735 Sechium edule HOM05D002529 ORTHO05D002664 1.2e-06 57.0 53 47.2
BcaB06g26360 Brassica carinata HOM05D002529 ORTHO05D002664 1.5e-06 56.6 50 54.0
BcaC05g28045 Brassica carinata HOM05D002529 ORTHO05D002664 1.5e-06 56.6 47 57.4
C05p40660 Brassica napus HOM05D002529 ORTHO05D002664 1.5e-06 56.6 47 57.4
BolC5t32805H Brassica oleracea HOM05D002529 ORTHO05D002664 1.5e-06 56.6 47 57.4
Cc06_g23700 Coffea canephora HOM05D002529 ORTHO05D002664 1.5e-06 56.6 49 57.1
FAN08G0687 Fragaria x ananassa HOM05D002529 ORTHO05D002664 1.5e-06 56.6 44 52.3
Oeu006310.1 Olea europaea HOM05D002529 ORTHO05D002664 1.5e-06 56.6 64 43.8
PSO210G7021 Papaver somniferum HOM05D002529 ORTHO05D002664 1.5e-06 56.6 45 53.3
Peaxi162Scf00071g00848 Petunia axillaris HOM05D002529 ORTHO05D002664 1.5e-06 56.6 41 63.4
AT3G22510 Arabidopsis thaliana HOM05D002529 ORTHO05D002664 2.0e-06 56.2 48 54.2
A05p26260 Brassica napus HOM05D002529 ORTHO05D002664 2.0e-06 56.2 47 55.3
CDE08G0620 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 2.6e-06 55.8 63 46.0
Glyma.19G009300 Glycine max HOM05D002529 ORTHO05D002664 2.6e-06 55.8 45 55.6
Phvul.003G288900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 2.6e-06 55.8 45 57.8
VMungo0251G2818 Vigna mungo HOM05D002529 ORTHO05D002664 2.6e-06 55.8 45 57.8
Zm00001eb218130 Zea mays HOM05D002529 ORTHO05D002664 2.6e-06 55.8 52 48.1
Ca_23953_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 3.4e-06 55.5 45 57.8
Ca_23959_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 3.4e-06 55.5 45 57.8
PGR004G0518 Punica granatum HOM05D002529 ORTHO05D002664 3.4e-06 55.5 49 51.0
RcHm_v2.0_Chr1g0334081 Rosa chinensis HOM05D002529 ORTHO05D002664 3.4e-06 55.5 42 54.8
RcHm_v2.0_Chr6g0306671 Rosa chinensis HOM05D000308 ORTHO05D000194 3.4e-06 55.5 52 50.0
SalBow5G5584 Salvia bowleyana HOM05D002529 ORTHO05D002664 3.4e-06 55.5 52 46.2
arahy.Tifrunner.gnm1.ann1.X9ULGB Arachis hypogaea HOM05D002529 ORTHO05D002664 4.5e-06 55.1 79 39.2
CANSAT78G1692 Cannabis sativa HOM05D002529 ORTHO05D002664 5.8e-06 54.7 52 48.1
CARHR098400 Cardamine hirsuta HOM05D002529 ORTHO05D002664 5.8e-06 54.7 46 54.3
TPR.G20395 Trifolium pratense HOM05D002529 ORTHO05D002664 5.8e-06 54.7 46 50.0
Zm00001eb134460 Zea mays HOM05D002529 ORTHO05D002664 5.8e-06 54.7 66 42.4
AL3G36820 Arabidopsis lyrata HOM05D002529 ORTHO05D002664 7.6e-06 54.3 48 54.2
arahy.Tifrunner.gnm1.ann1.2EE7P6 Arachis hypogaea HOM05D002529 ORTHO05D002664 7.6e-06 54.3 49 51.0
arahy.Tifrunner.gnm1.ann1.418MG4 Arachis hypogaea HOM05D002529 ORTHO05D002664 7.6e-06 54.3 49 51.0
arahy.Tifrunner.gnm1.ann1.G3F6T9 Arachis hypogaea HOM05D002529 ORTHO05D002664 7.6e-06 54.3 49 51.0
PSO761G0286 Papaver somniferum HOM05D002529 ORTHO05D002664 7.6e-06 54.3 45 51.1
TAR365G0359 Trochodendron aralioides HOM05D000460 ORTHO05D000333 7.6e-06 54.3 47 55.3
arahy.Tifrunner.gnm1.ann1.X8ZYJE Arachis hypogaea HOM05D002529 ORTHO05D002664 1.0e-05 53.9 51 54.9
MD11G1033000 Malus domestica HOM05D002529 ORTHO05D002664 1.0e-05 53.9 48 52.1


User provided reference genes

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