Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 5.5e-150 534.3 268 100.0
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.5e-128 461.8 267 83.1
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.5e-128 461.8 267 83.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.0e-127 460.3 266 82.0
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 1.2e-125 453.4 267 80.9
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.6e-125 453.0 263 82.5
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.6e-125 451.8 267 80.9
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.0e-124 448.7 267 80.9
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.5e-123 446.4 267 79.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.7e-119 433.0 266 78.6
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.7e-119 433.0 265 79.2
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.3e-119 432.6 266 78.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.3e-119 432.6 265 78.5
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.0e-119 431.4 266 78.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 8.6e-119 430.6 267 77.9
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.9e-118 429.5 267 75.3
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.5e-118 429.1 265 75.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 5.6e-118 427.9 266 76.3
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 5.6e-118 427.9 266 77.1
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.2e-117 426.8 266 78.2
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.1e-117 426.0 264 75.8
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 6.2e-117 424.5 266 78.6
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 6.2e-117 424.5 266 77.8
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.2e-117 424.5 264 75.0
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-116 423.7 264 74.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.4e-116 423.3 264 74.6
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.4e-116 423.3 266 76.3
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.8e-116 422.9 266 76.3
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 4.0e-116 421.8 264 74.6
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 8.9e-116 420.6 264 75.8
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.2e-115 420.2 265 74.7
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.4e-115 418.7 262 76.0
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.4e-115 418.3 265 73.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.8e-115 417.9 265 74.7
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.8e-115 417.9 266 75.2
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 7.5e-115 417.5 266 75.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 9.8e-115 417.2 267 75.7
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.3e-114 416.8 266 75.2
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-114 416.4 265 74.3
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.9e-114 415.6 267 75.3
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.7e-114 415.2 266 74.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 8.3e-114 414.1 264 74.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.1e-113 413.7 264 74.6
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.9e-113 412.9 267 72.7
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.4e-113 412.5 264 74.2
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 7.0e-113 411.0 263 76.0
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 3.5e-112 408.7 265 72.8
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 3.5e-112 408.7 266 72.9
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.1e-111 404.8 265 72.5
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.1e-111 404.8 265 72.5
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 8.6e-111 404.1 265 72.8
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.5e-110 403.3 269 73.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.5e-110 403.3 270 73.0
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 2.5e-110 402.5 265 72.5
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.5e-110 402.5 265 73.6
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.5e-110 402.5 263 71.9
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.6e-110 401.4 266 72.6
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 5.6e-110 401.4 265 71.7
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.5e-110 400.6 265 71.7
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.2e-109 400.2 264 73.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.6e-109 399.8 263 73.0
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 2.8e-109 399.1 268 73.1
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.1e-108 397.1 266 72.9
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.4e-108 396.7 266 70.7
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.1e-108 395.6 265 72.5
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 3.1e-108 395.6 267 70.8
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 4.0e-108 395.2 265 72.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 4.0e-108 395.2 265 72.1
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.0e-108 395.2 266 71.8
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.2e-108 394.8 301 66.8
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 8.9e-108 394.0 265 72.1
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 8.9e-108 394.0 268 73.5
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.0e-107 392.9 265 72.1
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.6e-107 392.5 269 70.6
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 5.8e-107 391.3 269 70.3
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 5.8e-107 391.3 265 70.6
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.7e-106 389.8 266 68.4
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.2e-106 389.4 314 62.4
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.9e-106 389.0 269 70.3
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.4e-105 386.7 265 69.8
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 3.2e-105 385.6 266 68.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 3.2e-105 385.6 267 68.5
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.1e-105 385.2 265 69.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 5.4e-105 384.8 266 69.2
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 5.4e-105 384.8 265 70.9
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 7.1e-105 384.4 263 70.0
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 7.1e-105 384.4 266 70.3
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 7.1e-105 384.4 266 68.8
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 9.2e-105 384.0 262 69.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 9.2e-105 384.0 263 68.1
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.2e-104 383.6 268 69.0
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-104 383.6 263 69.6
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.2e-104 383.6 266 69.5
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-104 383.3 265 70.9
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.1e-104 382.9 266 67.7
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 2.7e-104 382.5 263 68.8
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 3.5e-104 382.1 265 67.9
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 3.5e-104 382.1 297 65.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 4.6e-104 381.7 266 68.0
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 4.6e-104 381.7 266 67.7
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.0e-103 380.6 266 67.7
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.3e-103 380.2 267 67.8
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.3e-103 380.2 266 67.3
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.3e-103 380.2 266 67.7
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.3e-103 380.2 262 69.8
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.3e-103 379.4 252 73.4
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 3.9e-103 378.6 262 68.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 3.9e-103 378.6 266 66.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 5.1e-103 378.3 266 67.3
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 5.1e-103 378.3 265 67.2
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 6.6e-103 377.9 266 69.2
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.5e-102 376.7 346 56.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.5e-102 376.7 271 66.4
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.5e-102 376.7 265 69.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.5e-102 376.7 263 66.9
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.3e-102 375.2 265 70.2
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 6.2e-101 371.3 269 63.6
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.1e-100 369.0 226 78.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 6.8e-100 367.9 266 68.0
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.6e-99 365.9 215 81.9
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.9e-98 362.5 303 61.1
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.8e-98 362.1 226 74.3
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.5e-94 350.1 268 64.2
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.8e-93 345.9 269 62.8
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 5.3e-92 341.7 264 64.4
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.0e-91 339.7 266 62.0
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.6e-91 339.3 266 62.4
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 7.6e-91 337.8 267 61.4
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 3.5e-88 328.9 266 59.0
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 4.9e-82 308.5 266 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 6.0e-80 301.6 266 56.0
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.5e-78 296.2 266 51.1
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 8.1e-77 291.2 245 57.6
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 9.0e-76 287.7 277 56.3
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.6e-75 286.2 266 52.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 9.9e-75 284.3 148 91.2
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-73 280.4 196 70.4
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.2e-72 277.3 266 51.5
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.6e-72 275.4 266 52.6
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.3e-71 273.9 265 50.2
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.5e-70 270.4 234 57.3
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 2.5e-70 269.6 264 48.5
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 5.6e-70 268.5 264 48.1
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.2e-65 252.7 206 58.7
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.1e-64 250.0 233 53.6
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-58 230.7 170 62.4
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.5e-57 226.5 251 49.0
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.5e-54 216.5 293 46.8
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.8e-52 210.3 209 47.8
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 9.1e-52 208.0 155 63.9
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.0e-50 204.5 162 62.3
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.3e-50 204.1 149 62.4
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-48 197.6 181 55.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.3e-45 187.6 117 74.4
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.9e-42 176.4 116 69.0
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.4e-41 174.1 264 36.0
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 9.7e-30 134.8 108 65.7
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.4e-28 131.0 263 28.9
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 9.1e-28 128.3 215 34.0
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 2.0e-27 127.1 253 29.2
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.7e-24 115.9 76 75.0
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.2e-22 111.3 133 45.1
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 9.8e-22 108.2 215 29.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-20 104.4 128 46.9
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 7.5e-14 82.0 255 27.5
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 8.6e-10 68.6 59 50.8
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 3.3e-09 66.6 40 80.0


User provided reference genes

Program Settings