Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 2125.9 1068 100.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1877.1 1105 87.4
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1744.2 1076 79.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1719.9 1073 80.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1705.3 1087 78.5
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1672.5 1078 76.8
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1661.0 1143 73.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1654.0 1078 76.7
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1650.2 1076 76.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1645.2 1078 75.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1639.8 1077 76.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1636.7 1072 75.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1632.5 1086 75.3
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1630.5 1081 74.4
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1627.5 1079 74.9
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1624.8 1073 75.1
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1624.4 1074 75.0
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1079 74.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1073 75.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1616.7 1079 74.6
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1605.1 1083 73.3
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1075 73.6
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1103 71.8
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1598.9 1084 73.8
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1085 73.1
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1086 72.5
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1086 73.0
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1086 73.3
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1086 72.9
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1577.0 1077 73.4
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1076 73.5
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1573.1 1075 72.7
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1569.3 1084 72.9
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1089 72.1
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1076 73.0
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1077 72.8
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1082 72.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1087 72.6
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1085 72.5
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1086 71.2
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1075 71.8
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1077 71.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1546.2 1081 71.3
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 1068 72.6
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 1087 71.3
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1083 69.9
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1086 70.6
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1538.9 1090 72.1
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1537.3 1077 70.5
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1535.4 1086 69.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1533.9 1082 70.7
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1532.7 1074 71.0
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1077 70.4
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1082 70.5
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1077 70.2
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1087 70.9
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1528.1 1080 70.4
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1083 70.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1522.3 1082 70.0
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1521.1 1086 70.3
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1520.8 1082 70.1
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1518.8 1082 69.7
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1517.7 1168 67.0
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1097 69.5
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1514.6 1087 71.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1086 69.8
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1086 69.8
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 1087 70.0
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 993 75.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1510.4 1098 69.5
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1089 69.2
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1168 66.8
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1507.3 1086 70.1
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1506.9 1100 70.2
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1503.8 1087 69.6
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1501.9 1083 70.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1497.6 1087 69.5
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1496.9 1077 68.5
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1495.3 1077 68.8
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1493.8 1093 69.2
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1490.7 1076 69.3
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1490.3 1076 68.8
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1489.6 1084 68.4
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1488.4 1084 68.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1487.6 1073 70.7
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1486.9 1076 69.1
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1486.5 1076 69.1
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1485.7 1076 69.0
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 1076 69.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1483.0 1075 68.1
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1483.0 1076 68.9
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1481.1 1076 68.7
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1481.1 1076 68.7
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1481.1 1077 68.2
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1480.7 1076 68.4
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1480.3 1076 68.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1479.5 1084 68.5
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1475.3 1067 69.1
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 1077 68.3
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1463.0 1010 71.9
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1462.6 1082 67.6
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1456.8 1106 65.9
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1435.2 1048 68.0
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1424.1 1100 65.5
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1420.6 1074 65.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1402.5 1086 66.6
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1389.4 994 71.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1380.5 1097 62.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1373.6 979 69.9
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1329.3 1008 68.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1304.7 1079 63.9
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1169.5 789 74.5
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1133.2 1080 53.1
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1128.2 1081 52.6
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1116.3 688 81.4
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1113.6 751 74.4
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1112.8 1122 51.2
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1092.8 1079 51.0
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1082.4 1078 51.0
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1079.3 717 76.0
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 7.2e-310 1067.4 670 78.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.0e-300 1035.4 836 61.1
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.9e-258 896.0 813 58.8
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.3e-247 859.8 612 72.4
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 2.1e-237 826.6 498 82.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.0e-235 820.1 952 47.1
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.9e-231 805.8 624 67.5
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 6.5e-226 788.5 631 62.4
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.4e-207 727.6 600 63.8
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.0e-198 697.2 977 43.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.3e-145 519.2 447 63.1
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.4e-132 478.4 302 75.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.6e-128 464.9 384 60.7
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.7e-114 416.4 287 72.1
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.0e-78 298.5 290 53.8
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 3.0e-66 258.1 244 54.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.4e-65 254.2 205 64.9
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.9e-52 212.2 137 70.8
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.1e-44 186.4 136 68.4
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 1.1e-34 153.3 160 53.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 2.4e-34 152.1 133 57.9
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 4.2e-31 141.4 148 51.4
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 9.6e-28 130.2 108 60.2
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.2e-25 123.2 97 63.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 5.8e-25 120.9 88 64.8
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 4.2e-15 88.2 76 51.3
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 6.0e-14 84.3 45 84.4
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.3e-13 83.2 145 37.2
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 5.6e-12 77.8 47 80.9
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 6.9e-10 70.9 114 41.2
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 9.3e-07 60.5 39 69.2


User provided reference genes

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