Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 8.4e-140 500.4 255 100.0
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 5.7e-104 381.3 263 74.9
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 3.5e-77 292.4 257 65.0
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.6e-74 283.5 264 62.5
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 5.7e-72 275.0 262 57.3
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-69 267.3 261 56.3
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-69 266.9 262 56.1
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.6e-69 266.9 262 56.1
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.3e-68 263.1 265 59.2
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 6.1e-66 255.0 262 54.2
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.1e-65 252.7 231 64.5
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 5.2e-65 251.9 264 55.7
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 6.8e-65 251.5 261 53.6
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 2.6e-64 249.6 261 59.4
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.3e-63 247.3 264 54.9
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 4.9e-63 245.4 264 57.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.1e-62 244.2 256 58.6
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.4e-62 243.8 269 52.8
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 4.6e-61 238.8 266 57.1
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.6e-61 238.8 263 54.0
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 6.0e-61 238.4 263 55.1
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.5e-59 233.0 266 53.8
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.2e-58 230.7 255 54.5
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-58 230.3 255 54.1
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-57 227.6 232 56.5
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.8e-57 226.9 275 54.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 4.0e-57 225.7 270 53.3
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 5.2e-57 225.3 276 51.4
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.2e-56 224.2 270 55.2
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.7e-55 220.3 286 50.0
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.7e-55 220.3 241 55.6
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.7e-55 219.2 261 51.0
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 4.9e-55 218.8 243 55.1
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 6.4e-55 218.4 218 62.4
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 5.4e-54 215.3 284 49.3
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 9.2e-54 214.5 266 52.6
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.7e-53 213.0 274 54.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.0e-52 209.5 234 55.6
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 3.0e-52 209.5 270 52.2
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 5.1e-52 208.8 293 48.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.5e-51 207.2 249 54.2
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-51 207.2 244 54.5
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.9e-51 206.8 230 53.5
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.5e-51 206.5 259 54.4
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 4.3e-51 205.7 264 48.5
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.6e-50 203.8 245 53.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 3.6e-50 202.6 288 51.4
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.6e-50 202.6 234 53.4
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.1e-49 201.1 209 57.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.5e-48 197.2 258 52.3
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.5e-48 197.2 236 53.8
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.3e-47 194.1 268 49.6
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.4e-46 190.7 234 53.0
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.9e-46 190.3 257 46.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 7.1e-46 188.3 273 47.6
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.7e-45 186.4 264 53.4
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.7e-45 186.4 268 48.1
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 7.8e-45 184.9 267 47.2
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.0e-44 184.5 316 45.9
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.0e-44 184.5 316 45.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 6.6e-44 181.8 225 54.2
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.9e-43 180.3 241 51.5
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.5e-43 179.9 323 45.2
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.5e-43 179.9 300 48.7
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 5.6e-43 178.7 265 46.8
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 7.3e-43 178.3 246 50.8
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 1.2e-42 177.6 227 46.3
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.6e-42 177.2 211 54.0
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.6e-42 176.0 270 50.4
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.4e-41 174.1 292 44.5
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.8e-41 173.7 250 50.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 4.0e-41 172.6 248 46.4
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 5.2e-41 172.2 222 55.0
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.2e-40 171.0 263 50.2
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 5.8e-40 168.7 260 48.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 6.4e-39 165.2 286 43.4
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-38 164.1 231 50.6
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.4e-38 164.1 249 46.2
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 3.2e-38 162.9 228 48.7
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 5.4e-38 162.2 268 44.4
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.4e-38 162.2 310 47.4
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 9.3e-38 161.4 191 57.1
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 9.3e-38 161.4 260 49.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.6e-37 160.6 162 59.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.1e-37 160.2 240 48.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 4.6e-37 159.1 270 45.6
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.0e-36 157.9 243 43.6
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.3e-36 157.5 227 49.8
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.7e-36 157.1 252 45.2
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.1e-36 155.6 249 48.6
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 5.1e-36 155.6 268 47.8
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.5e-35 153.3 238 49.2
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 7.3e-35 151.8 259 42.9
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 7.3e-35 151.8 259 42.9
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 7.3e-35 151.8 210 51.0
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 3.6e-34 149.4 258 42.6
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.1e-33 147.9 193 47.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-33 147.5 244 43.4
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.9e-33 145.2 240 43.3
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.9e-33 145.2 222 47.7
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-32 144.4 257 42.4
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 2.6e-32 143.3 259 42.1
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 7.6e-32 141.7 229 46.3
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.3e-31 141.0 199 49.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-30 137.5 205 47.3
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.9e-30 137.1 197 47.2
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.4e-30 136.7 229 42.4
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.2e-30 136.0 227 46.7
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 7.1e-30 135.2 117 62.4
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.1e-30 135.2 226 39.8
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 9.3e-30 134.8 227 44.5
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 9.3e-30 134.8 239 40.6
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.6e-29 132.5 241 39.8
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 6.0e-29 132.1 205 43.4
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.0e-29 132.1 167 53.9
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.3e-28 131.0 263 38.8
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.9e-28 129.4 236 41.1
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 3.9e-28 129.4 255 42.4
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 6.6e-28 128.6 237 40.9
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 6.6e-28 128.6 75 81.3
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 7.3e-27 125.2 148 54.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.1e-26 123.6 145 55.2
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.8e-26 122.5 158 51.3
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 6.9e-25 118.6 229 44.5
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.0e-24 117.1 219 41.1
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.0e-24 117.1 229 44.1
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-24 117.1 229 39.3
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.6e-24 116.7 83 69.9
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 1.3e-23 114.4 232 38.8
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 2.9e-23 113.2 225 44.0
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.9e-22 110.5 227 40.5
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.9e-22 110.5 227 40.5
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 3.2e-22 109.8 272 34.9
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 3.2e-22 109.8 246 38.6
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.1e-21 107.1 228 40.4
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.5e-21 106.3 189 46.0
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.5e-21 106.3 101 61.4
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 5.1e-20 102.4 198 39.9
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 4.3e-19 99.4 197 44.2
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 4.3e-19 99.4 194 45.9
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.0e-15 88.2 222 42.8
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.4e-14 84.3 202 40.1
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 1.6e-13 80.9 80 60.0
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.3e-12 77.0 260 37.7
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 6.7e-12 75.5 52 69.2
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.5e-11 74.3 92 45.7
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.5e-11 73.6 52 67.3
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 5.7e-11 72.4 207 36.7
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 1.3e-10 71.2 160 41.2
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 1.3e-10 71.2 135 40.0
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 1.3e-10 71.2 157 38.9
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.1e-10 70.5 111 40.5
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-10 70.1 76 47.4
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 6.3e-10 68.9 204 32.8
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 4.1e-09 66.2 265 32.8
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 5.3e-09 65.9 82 47.6
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 2.6e-08 63.5 224 31.2
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 7.6e-08 62.0 224 34.8
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.6e-08 62.0 79 44.3
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.3e-07 61.2 91 41.8
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 2.9e-07 60.1 224 32.1
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-06 58.2 220 31.4
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.4e-06 57.8 227 30.0
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 2.5e-06 57.0 224 28.6
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 3.2e-06 56.6 169 33.7
Cpa.g.sc127.8 Carica papaya HOM05D000333 ORTHO05D000190 4.2e-06 56.2 94 39.4
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 7.2e-06 55.5 44 59.1
C07p39490 Brassica napus HOM05D000333 ORTHO05D000190 9.3e-06 55.1 81 40.7


User provided reference genes

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