Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.7e-148 528.1 254 100.0
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.6e-103 379.8 254 70.9
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 4.3e-96 355.1 256 66.8
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 4.3e-96 355.1 245 69.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.7e-95 352.1 262 67.2
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 4.8e-95 351.7 259 66.8
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 3.1e-94 349.0 228 74.6
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 6.9e-94 347.8 263 66.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.2e-93 347.1 261 68.6
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.5e-93 346.7 258 69.8
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.5e-93 346.7 261 68.6
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.5e-93 345.1 257 70.0
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.0e-92 341.7 261 65.1
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.1e-91 340.5 260 67.7
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.9e-91 339.7 258 64.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 3.2e-91 339.0 258 64.7
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 5.5e-91 338.2 257 65.0
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.7e-90 335.1 257 64.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 6.1e-90 334.7 254 64.6
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 2.3e-89 332.8 256 64.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.3e-89 332.8 239 66.9
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.3e-89 332.8 239 66.9
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 9.7e-88 327.4 253 65.6
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 4.8e-87 325.1 261 64.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.4e-86 322.8 255 63.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.0e-85 319.7 259 64.5
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.6e-85 319.3 258 63.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.6e-85 319.3 223 68.6
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.6e-85 319.3 256 67.6
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.5e-85 318.5 262 61.5
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.3e-84 317.0 178 79.8
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.7e-84 316.6 184 79.3
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.7e-84 316.6 256 65.2
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.2e-84 316.2 259 60.6
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.2e-84 316.2 254 63.0
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.8e-84 315.5 178 79.8
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.5e-84 314.7 260 60.8
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 8.5e-84 314.3 251 62.5
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.5e-83 312.8 249 61.8
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.2e-83 312.4 258 63.6
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.5e-83 311.6 263 61.6
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 7.2e-83 311.2 233 64.4
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.2e-82 310.5 265 60.0
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-82 310.1 256 62.1
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.6e-82 310.1 176 79.5
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 2.1e-82 309.7 250 62.4
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 2.7e-82 309.3 255 63.5
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.6e-82 308.9 183 76.0
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 4.7e-82 308.5 265 58.1
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 4.7e-82 308.5 226 66.4
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.0e-81 307.4 175 79.4
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.4e-81 307.0 184 75.0
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.8e-81 306.6 261 59.0
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.8e-81 306.6 250 62.4
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 3.0e-81 305.8 248 64.9
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.0e-81 305.4 222 68.0
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.0e-81 305.4 260 58.8
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 5.2e-81 305.1 251 62.9
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.2e-81 305.1 251 62.9
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.2e-81 305.1 260 58.8
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 6.7e-81 304.7 263 59.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 8.8e-81 304.3 226 66.4
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 8.8e-81 304.3 266 59.4
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 8.8e-81 304.3 264 60.6
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.0e-80 303.1 225 64.9
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-80 303.1 266 59.0
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.0e-80 303.1 257 58.8
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 2.0e-80 303.1 257 57.6
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 4.4e-80 302.0 252 62.7
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.4e-80 302.0 225 66.7
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.7e-80 300.8 252 62.7
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 9.7e-80 300.8 262 57.3
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.3e-79 300.4 172 77.3
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.7e-79 300.1 171 77.8
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.8e-79 299.3 222 66.7
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 3.7e-79 298.9 179 74.3
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 6.3e-79 298.1 217 65.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.1e-78 297.4 266 55.6
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.1e-78 297.4 265 57.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-78 297.0 259 59.5
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.8e-78 296.6 229 62.9
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.4e-78 296.2 258 60.1
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 3.1e-78 295.8 266 56.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 3.1e-78 295.8 263 59.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.1e-78 295.8 258 60.5
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 4.1e-78 295.4 223 66.8
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.0e-78 294.7 185 72.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 9.1e-78 294.3 258 57.8
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.2e-77 293.9 259 56.4
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.2e-77 293.9 217 66.4
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.6e-77 293.5 259 57.1
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.0e-77 293.1 217 65.4
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.7e-77 292.7 179 72.1
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.5e-77 292.4 250 58.0
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 4.5e-77 292.0 257 57.6
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 5.9e-77 291.6 216 64.4
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 7.7e-77 291.2 257 56.0
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.0e-76 290.8 258 58.9
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.2e-76 289.7 226 64.2
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.9e-76 289.3 261 56.3
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.9e-76 289.3 261 54.4
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 3.8e-76 288.9 214 65.9
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 5.0e-76 288.5 261 55.9
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 6.5e-76 288.1 260 58.8
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 8.5e-76 287.7 215 65.1
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 8.5e-76 287.7 266 55.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.5e-76 287.7 215 64.7
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.5e-76 287.7 215 64.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 4.2e-75 285.4 261 54.8
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.2e-75 285.4 262 56.9
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 5.5e-75 285.0 250 56.4
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 9.4e-75 284.3 255 57.3
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.2e-74 283.9 294 52.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 2.1e-74 283.1 251 56.2
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 4.7e-74 282.0 178 72.5
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-73 280.4 263 55.1
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.2e-72 277.3 250 54.8
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 2.2e-71 273.1 250 54.4
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.5e-69 265.4 145 84.1
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.2e-68 263.1 251 55.8
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.2e-67 258.1 266 53.8
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.7e-66 256.1 218 58.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.8e-65 251.5 148 77.7
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 2.6e-64 249.6 179 65.9
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 7.5e-64 248.1 215 58.6
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 9.8e-64 247.7 256 52.3
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.8e-63 246.1 224 58.5
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.4e-62 243.0 235 56.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 4.1e-62 242.3 255 49.4
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 5.4e-62 241.9 166 65.1
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.6e-60 235.0 178 65.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 8.0e-58 228.0 143 69.2
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.3e-57 226.5 165 63.0
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 6.8e-57 224.9 139 72.7
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.4e-56 222.6 152 69.1
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 7.5e-56 221.5 164 59.8
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.4e-55 218.4 260 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 3.2e-54 216.1 170 55.9
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.2e-54 216.1 166 56.0
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.2e-54 216.1 152 66.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.0e-52 211.1 193 55.4
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.9e-52 209.1 168 55.4
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 8.6e-52 208.0 257 49.0
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.4e-46 189.9 111 77.5
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.3e-36 157.5 132 58.3
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.6e-35 152.1 93 73.1
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-32 144.1 143 53.8
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.3e-31 141.0 151 50.3
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.9e-31 139.0 215 43.7
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-30 136.3 84 75.0
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.9e-28 129.4 85 61.2
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.8e-25 120.6 78 76.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 5.2e-25 119.0 141 40.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.5e-24 117.5 213 30.0
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 9.9e-24 114.8 63 82.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.3e-23 114.4 65 76.9
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.4e-22 109.0 71 69.0
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-18 97.1 67 65.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-17 94.4 86 55.8
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-13 81.3 52 69.2
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 2.1e-13 80.5 46 76.1
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.4e-11 72.0 52 61.5
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.3e-10 71.2 75 58.7
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-10 71.2 51 62.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.8e-10 69.3 39 76.9
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-08 63.2 43 65.1
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 2.9e-07 60.1 37 75.7
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.4e-06 57.0 34 67.6


User provided reference genes

Program Settings