Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043135.1 Olea europaea HOM05D001779 ORTHO05D001753 4.3e-169 598.6 304 100.0
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 1.2e-51 208.4 325 45.8
Dinv12682 Davidia involucrata HOM05D001779 ORTHO05D001753 2.0e-49 201.1 333 44.4
Lj6A358T55 Lonicera japonica HOM05D001779 ORTHO05D001753 3.7e-48 196.8 333 44.4
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 3.2e-47 193.7 328 44.2
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 8.6e-45 185.7 265 47.5
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 1.1e-44 185.3 338 42.6
Nitab4.5_0001568g0160 Nicotiana tabacum HOM05D001779 ORTHO05D001753 4.3e-44 183.3 269 46.8
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 1.6e-43 181.4 332 42.8
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 1.6e-43 181.4 335 43.3
Solyc01g006500.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 1.6e-43 181.4 333 44.1
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 2.1e-43 181.0 338 42.0
PGSC0003DMG400032206 Solanum tuberosum HOM05D001779 ORTHO05D001753 3.6e-43 180.3 335 43.9
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 3.6e-43 180.3 326 44.2
Sopen01g002480 Solanum pennellii HOM05D001779 ORTHO05D001753 4.7e-43 179.9 334 44.3
THA.LOC104802670 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 2.3e-42 177.6 334 39.8
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 4.0e-42 176.8 338 41.4
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 5.2e-42 176.4 334 41.9
Thecc.01G224400 Theobroma cacao HOM05D001779 ORTHO05D001753 6.8e-42 176.0 338 41.4
Duzib138G0054 Durio zibethinus HOM05D001779 ORTHO05D001753 1.2e-41 175.3 339 42.2
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 1.2e-41 175.3 311 42.1
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 2.0e-41 174.5 331 40.8
Potri.002G243600 Populus trichocarpa HOM05D001779 ORTHO05D001753 2.0e-41 174.5 336 42.0
Gohir.D11G144900 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.6e-41 174.1 338 41.4
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.7e-40 171.4 328 41.5
COL.COLO4_15672 Corchorus olitorius HOM05D001779 ORTHO05D001753 2.9e-40 170.6 325 40.6
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 2.9e-40 170.6 328 41.5
Manes.12G045500 Manihot esculenta HOM05D001779 ORTHO05D001753 4.9e-40 169.9 332 40.1
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 6.4e-40 169.5 322 43.5
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 1.1e-39 168.7 283 42.4
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 1.1e-39 168.7 343 38.8
Aa31sc37G30 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.9e-39 167.9 311 41.5
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 2.4e-39 167.5 340 40.6
SalBow6G6670 Salvia bowleyana HOM05D001779 ORTHO05D001753 3.2e-39 167.2 304 42.4
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 4.1e-39 166.8 332 41.0
CSS0033397 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 9.2e-39 165.6 328 40.5
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 9.2e-39 165.6 273 44.0
QL09p053959 Quercus lobata HOM05D001779 ORTHO05D001753 9.2e-39 165.6 339 42.2
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 1.6e-38 164.9 342 38.9
Migut.D02488 Erythranthe guttata HOM05D001779 ORTHO05D001753 3.5e-38 163.7 347 38.3
FAN08G2977 Fragaria x ananassa HOM05D001779 ORTHO05D001753 6.0e-38 162.9 330 39.7
TWI18G0520 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 6.0e-38 162.9 328 39.0
GSVIVG01028689001 Vitis vinifera HOM05D001779 ORTHO05D001753 6.0e-38 162.9 332 41.3
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 1.7e-37 161.4 329 39.8
PGR044G1326 Punica granatum HOM05D001779 ORTHO05D001753 2.3e-37 161.0 308 40.9
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 6.6e-37 159.5 342 38.6
Rhsim13G0046000 Rhododendron simsii HOM05D001779 ORTHO05D001753 8.6e-37 159.1 437 35.5
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 1.1e-36 158.7 337 38.3
CARHR183130 Cardamine hirsuta HOM05D001779 ORTHO05D001753 1.1e-36 158.7 340 39.1
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 1.1e-36 158.7 303 41.3
Lsat_1_v5_gn_8_89800 Lactuca sativa HOM05D001779 ORTHO05D001753 1.1e-36 158.7 265 45.3
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 1.5e-36 158.3 340 38.8
A06p38950 Brassica napus HOM05D001779 ORTHO05D001753 1.9e-36 157.9 337 38.3
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 1.9e-36 157.9 293 42.7
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 5.6e-36 156.4 338 39.1
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 7.3e-36 156.0 340 38.5
C07p39380 Brassica napus HOM05D001779 ORTHO05D001753 9.5e-36 155.6 340 37.9
BolC7t44458H Brassica oleracea HOM05D001779 ORTHO05D001753 9.5e-36 155.6 340 37.9
Lalb_Chr19g0125661 Lupinus albus HOM05D001779 ORTHO05D001753 1.6e-35 154.8 286 44.1
HPP92_023347 Vanilla planifolia HOM05D001779 ORTHO05D001753 2.8e-35 154.1 262 45.4
Psat3g145680 Pisum sativum HOM05D001779 ORTHO05D001753 1.1e-34 152.1 347 37.5
PSO674G0008 Papaver somniferum HOM05D001779 ORTHO05D001753 2.3e-34 151.0 265 41.9
vmacro02765 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 2.3e-34 151.0 364 36.5
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 4.0e-34 150.2 413 33.4
Phvul.008G126700 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 6.8e-34 149.4 320 40.9
Sed0015503 Sechium edule HOM05D001779 ORTHO05D001753 8.9e-34 149.1 330 38.2
arahy.Tifrunner.gnm1.ann1.P8X82K Arachis hypogaea HOM05D001779 ORTHO05D001753 2.0e-33 147.9 342 37.7
Lj1g0021736 Lotus japonicus HOM05D001779 ORTHO05D001753 5.8e-33 146.4 347 37.8
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 7.5e-33 146.0 342 36.5
Glyma.08G352500 Glycine max HOM05D001779 ORTHO05D001753 1.1e-31 142.1 294 39.5
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 2.4e-31 141.0 283 38.2
FAN18G1972 Fragaria x ananassa HOM05D001779 ORTHO05D001753 4.1e-31 140.2 330 36.7
FvH4_5g33190 Fragaria vesca HOM05D001779 ORTHO05D001753 2.1e-30 137.9 330 36.1
CANSAT35G0239 Cannabis sativa HOM05D001779 ORTHO05D001753 2.7e-30 137.5 255 39.2
Hund18390 Selenicereus undatus HOM05D001779 ORTHO05D001753 6.0e-30 136.3 273 39.6
MD10G1163400 Malus domestica HOM05D001779 ORTHO05D001753 3.0e-29 134.0 333 36.9
Prupe.8G201700 Prunus persica HOM05D001779 ORTHO05D001753 2.8e-27 127.5 275 39.6
VMungo1383G2648 Vigna mungo HOM05D001779 ORTHO05D001753 2.8e-27 127.5 310 37.7
RcHm_v2.0_Chr7g0231531 Rosa chinensis HOM05D001779 ORTHO05D001753 8.1e-27 125.9 331 36.0
Aqoxy5G00031 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 1.4e-26 125.2 265 37.7
SalBow6G7015 Salvia bowleyana HOM05D001779 ORTHO05D001753 1.4e-26 125.2 132 60.6
AUR62001096 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.0e-25 121.3 138 60.1
AUR62008921 Chenopodium quinoa HOM05D001779 ORTHO05D001753 5.8e-25 119.8 138 60.9
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 1.7e-24 118.2 275 39.3
Nn1g07882 Nelumbo nucifera HOM05D001779 ORTHO05D001753 6.4e-24 116.3 316 35.4
FAN04G2077 Fragaria x ananassa HOM05D001779 ORTHO05D001753 8.4e-24 115.9 330 34.2
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 3.5e-22 110.5 260 36.5
Cpa.g.sc8.143 Carica papaya HOM05D001779 ORTHO05D001753 7.8e-22 109.4 145 55.9
Ciclev10019744m.g Citrus clementina HOM05D001779 ORTHO05D001753 1.9e-20 104.8 143 53.1
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 2.5e-20 104.4 264 35.2
BcaC06g30763 Brassica carinata HOM05D001779 ORTHO05D001753 3.6e-19 100.5 139 54.7
Atru.chr5.2026 Acer truncatum HOM05D001779 ORTHO05D001753 8.1e-19 99.4 112 59.8
Cc01_g16940 Coffea canephora HOM05D001779 ORTHO05D001753 4.0e-18 97.1 53 83.0
SalBow6G1157 Salvia bowleyana HOM05D001779 ORTHO05D001753 4.0e-18 97.1 55 80.0
vmacro02764 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 1.5e-17 95.1 338 31.1
Rhsim13G0045700 Rhododendron simsii HOM05D001779 ORTHO05D001753 3.8e-16 90.5 266 32.3
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 3.8e-16 90.5 254 32.7
Ca_26872_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 6.4e-16 89.7 94 48.9
Os06g0172000 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 1.9e-15 88.2 62 75.8
TPR.G31105 Trifolium pratense HOM05D001779 ORTHO05D001753 5.4e-15 86.7 53 69.8
TPR.G39697 Trifolium pratense HOM05D001779 ORTHO05D001753 7.1e-15 86.3 136 48.5
AUR62008920 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.1e-14 84.7 49 77.6
Zm00001eb281690 Zea mays HOM05D001779 ORTHO05D001753 7.8e-14 82.8 70 67.1
Ca_07638_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 6.6e-13 79.7 152 48.0
Actinidia30070 Actinidia chinensis HOM05D001779 ORTHO05D001753 4.3e-12 77.0 49 75.5
Hund15421 Selenicereus undatus HOM05D001779 ORTHO05D001753 6.2e-11 73.2 254 30.3
SEGI_20018 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 3.1e-10 70.9 52 61.5
vmacro13689 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 1.5e-09 68.6 247 28.7
MD02G1306000 Malus domestica HOM05D001779 ORTHO05D001753 2.6e-09 67.8 241 30.7
Aqoxy2G02534 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 4.5e-09 67.0 53 56.6
TWI09G0293 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 7.6e-09 66.2 53 54.7
TAR636G0056 Trochodendron aralioides HOM05D001779 ORTHO05D001753 9.9e-09 65.9 53 52.8
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 1.3e-08 65.5 249 30.1
MSTRG.5036 Avicennia marina HOM05D001779 ORTHO05D001753 1.7e-08 65.1 253 27.7
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.7e-08 65.1 248 29.0
Oeu020033.1 Olea europaea HOM05D001779 ORTHO05D001753 1.7e-08 65.1 35 82.9
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 2.2e-08 64.7 248 29.0
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 2.2e-08 64.7 258 29.1
EL10Ac3g06265 Beta vulgaris HOM05D001779 ORTHO05D001753 2.9e-08 64.3 75 42.7
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 2.9e-08 64.3 52 55.8
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 2.9e-08 64.3 52 55.8
TAR633G2494 Trochodendron aralioides HOM05D001779 ORTHO05D001753 2.9e-08 64.3 250 30.0
HPP92_002622 Vanilla planifolia HOM05D001779 ORTHO05D001753 2.9e-08 64.3 53 58.5
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 3.8e-08 63.9 52 55.8
Lj3g0021087 Lotus japonicus HOM05D001779 ORTHO05D001753 6.4e-08 63.2 298 27.5
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 8.4e-08 62.8 261 28.7
AUR62002564 Chenopodium quinoa HOM05D001779 ORTHO05D001753 8.4e-08 62.8 53 52.8
Peaxi162Scf00126g01125 Petunia axillaris HOM05D001779 ORTHO05D001753 1.1e-07 62.4 52 51.9
HPP92_002695 Vanilla planifolia HOM05D001779 ORTHO05D001753 1.1e-07 62.4 53 56.6
Ah.07g203760 Amaranthus hybridus HOM05D001779 ORTHO05D001753 1.4e-07 62.0 67 44.8
TAR633G1986 Trochodendron aralioides HOM05D001779 ORTHO05D001753 1.4e-07 62.0 250 30.0
Lalb_Chr25g0282471 Lupinus albus HOM05D001779 ORTHO05D001753 1.9e-07 61.6 287 25.4
Lj9A638T72 Lonicera japonica HOM05D001779 ORTHO05D001753 2.4e-07 61.2 291 27.8
Sc14g0005010 Simmondsia chinensis HOM05D001779 ORTHO05D001753 2.4e-07 61.2 245 30.6
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 2.4e-07 61.2 250 29.2
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 3.2e-07 60.8 249 29.7
Cc02_g28360 Coffea canephora HOM05D001779 ORTHO05D001753 3.2e-07 60.8 301 26.9
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.2e-07 60.8 252 28.6
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 4.2e-07 60.5 53 49.1
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 4.2e-07 60.5 255 28.6
PSO782G1225 Papaver somniferum HOM05D001779 ORTHO05D001753 5.4e-07 60.1 276 27.9
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 7.1e-07 59.7 251 27.1
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 9.3e-07 59.3 252 28.2
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 9.3e-07 59.3 251 29.5
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.2e-06 58.9 246 28.0
Peaxi162Scf00071g01040 Petunia axillaris HOM05D001779 ORTHO05D001753 1.2e-06 58.9 252 27.4
QL04p008865 Quercus lobata HOM05D001779 ORTHO05D001753 1.2e-06 58.9 248 27.8
Nitab4.5_0000180g0110 Nicotiana tabacum HOM05D001779 ORTHO05D001753 1.6e-06 58.5 53 45.3
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.1e-06 58.2 246 28.0
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.1e-06 58.2 246 28.0
Nitab4.5_0001676g0060 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.1e-06 58.2 250 26.0
Hund22619 Selenicereus undatus HOM05D001779 ORTHO05D001753 2.1e-06 58.2 53 47.2
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 2.1e-06 58.2 53 47.2
FAN03G3349 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.5e-06 57.4 251 29.1
DCAR_016451 Daucus carota HOM05D001779 ORTHO05D001753 4.6e-06 57.0 242 28.9
Nn1g09634 Nelumbo nucifera HOM05D001779 ORTHO05D001753 6.0e-06 56.6 52 48.1
Nn8g40891 Nelumbo nucifera HOM05D001779 ORTHO05D001753 6.0e-06 56.6 52 48.1
Rhsim07G0058000 Rhododendron simsii HOM05D001779 ORTHO05D001753 6.0e-06 56.6 305 25.6
Solyc01g057200.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 6.0e-06 56.6 53 49.1
CAN.G484.86 Capsicum annuum HOM05D001779 ORTHO05D001753 7.9e-06 56.2 53 49.1
CAN.G50.4 Capsicum annuum HOM05D001779 ORTHO05D001753 7.9e-06 56.2 251 27.1


User provided reference genes

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