Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.9e-145 518.1 253 100.0
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.5e-130 468.4 253 90.1
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.3e-105 386.0 253 73.5
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.5e-104 383.3 253 73.5
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 7.4e-104 380.9 253 72.3
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.3e-103 380.2 254 74.4
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.7e-103 378.6 254 72.4
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 4.8e-103 378.3 254 71.3
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 6.2e-103 377.9 253 73.1
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 8.2e-103 377.5 253 73.5
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.1e-102 375.6 253 71.5
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 5.3e-102 374.8 254 72.4
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 5.3e-102 374.8 264 69.3
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 3.8e-100 368.6 253 70.8
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 4.9e-100 368.2 253 70.4
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.9e-99 366.3 226 76.1
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 3.2e-99 365.5 244 72.1
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 9.3e-99 364.0 253 70.4
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.2e-98 363.6 209 80.9
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.2e-98 363.6 256 68.4
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.6e-98 363.2 251 72.1
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.6e-98 363.2 244 70.5
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 4.6e-98 361.7 240 72.5
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 6.0e-98 361.3 253 68.8
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 6.0e-98 361.3 242 73.6
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 7.9e-98 360.9 254 71.7
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.3e-97 359.4 253 70.8
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 8.7e-97 357.5 253 68.8
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 8.7e-97 357.5 244 70.9
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 8.7e-97 357.5 224 75.9
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.1e-96 357.1 254 70.1
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.5e-96 355.9 207 79.2
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.5e-96 355.9 208 79.8
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 9.7e-96 354.0 244 68.4
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 9.7e-96 354.0 212 78.8
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.6e-95 353.2 207 77.8
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.6e-95 353.2 220 74.5
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.1e-95 352.8 220 75.0
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 2.1e-95 352.8 220 74.1
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.1e-95 352.8 252 67.5
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 2.1e-95 352.8 205 78.0
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 4.8e-95 351.7 217 74.2
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 4.8e-95 351.7 244 68.9
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 6.3e-95 351.3 246 67.1
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 6.3e-95 351.3 205 77.6
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 6.3e-95 351.3 246 68.3
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 6.3e-95 351.3 246 68.3
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 8.2e-95 350.9 222 73.4
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.8e-94 349.7 207 74.9
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.8e-94 349.7 244 68.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.8e-94 349.7 207 75.4
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.1e-94 349.0 206 76.7
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.1e-94 349.0 244 67.2
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-94 349.0 244 67.2
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-94 349.0 244 67.2
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 3.1e-94 349.0 207 78.3
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 5.3e-94 348.2 223 71.7
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 9.0e-94 347.4 257 65.4
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.4e-93 345.5 244 66.8
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.4e-93 345.5 221 74.2
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 3.4e-93 345.5 257 65.0
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 3.4e-93 345.5 249 66.7
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 4.5e-93 345.1 208 77.4
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.9e-93 344.7 220 74.1
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 7.6e-93 344.4 244 67.2
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 7.6e-93 344.4 244 67.2
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.3e-92 343.6 253 65.6
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.3e-92 343.6 227 72.7
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.0e-92 341.7 258 65.9
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 6.5e-92 341.3 223 71.7
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-91 340.5 247 65.6
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.4e-91 340.1 204 76.5
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.9e-91 339.7 252 64.3
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.9e-91 339.7 255 63.9
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 3.2e-91 339.0 255 67.8
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 4.2e-91 338.6 351 52.4
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 5.5e-91 338.2 203 77.3
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 7.2e-91 337.8 251 63.7
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 9.3e-91 337.4 244 65.2
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 2.1e-90 336.3 247 65.2
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 2.1e-90 336.3 214 72.4
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 2.7e-90 335.9 221 71.5
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.7e-90 335.9 244 64.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.7e-90 335.9 247 64.8
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.7e-90 335.9 244 64.8
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 3.6e-90 335.5 249 65.1
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 4.6e-90 335.1 256 62.9
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 4.6e-90 335.1 251 64.1
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 4.6e-90 335.1 251 64.1
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 6.1e-90 334.7 251 63.3
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 1.3e-89 333.6 216 71.3
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 3.9e-89 332.0 207 73.4
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 6.7e-89 331.3 250 64.4
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.1e-88 330.5 208 73.6
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.5e-88 330.1 202 73.3
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 7.4e-88 327.8 198 74.2
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 9.7e-88 327.4 204 72.5
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.3e-87 327.0 201 73.1
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.3e-87 327.0 222 70.3
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 4.8e-87 325.1 202 75.7
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-86 323.6 291 56.0
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 5.9e-85 318.2 203 70.9
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 2.1e-82 309.7 172 83.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 5.1e-81 305.1 253 61.7
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 9.7e-80 300.8 221 66.5
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 5.3e-78 295.0 200 67.5
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 3.6e-74 282.3 313 50.8
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.0e-69 266.5 172 71.5
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 4.5e-69 265.4 148 82.4
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-65 253.8 279 49.5
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 3.3e-64 249.2 136 84.6
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 8.2e-63 244.6 221 55.7
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 2.1e-58 229.9 202 58.9
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 6.1e-58 228.4 249 47.0
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.2e-55 219.9 189 52.9
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 3.1e-54 216.1 146 69.2
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 2.9e-52 209.5 119 82.4
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 5.0e-52 208.8 191 52.4
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.2e-48 197.6 190 48.4
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 3.7e-47 192.6 106 87.7
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 4.9e-47 192.2 154 59.1
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.7e-44 183.7 202 48.5
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 2.9e-44 183.0 151 58.9
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 5.0e-44 182.2 169 53.8
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.9e-43 180.3 100 85.0
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 4.3e-43 179.1 121 65.3
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 9.5e-43 177.9 100 83.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.4e-41 174.1 100 84.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 9.8e-40 167.9 97 83.5
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 5.6e-35 152.1 87 85.1
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 2.9e-31 139.8 84 72.6
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 6.4e-31 138.7 84 71.4
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 8.6e-28 128.3 183 43.7
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.1e-27 127.9 203 36.5
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 5.6e-27 125.6 101 57.4
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 2.0e-24 117.1 69 76.8
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 5.8e-24 115.5 72 73.6
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 5.8e-24 115.5 72 73.6
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 5.8e-24 115.5 72 73.6
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 5.8e-24 115.5 72 73.6
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 2.2e-23 113.6 71 73.2
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.2e-23 113.6 102 59.8
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 8.3e-23 111.7 107 49.5
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 7.3e-19 98.6 96 45.8
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.5e-16 90.9 60 66.7
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 4.4e-16 89.4 176 31.2
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 3.5e-13 79.7 49 73.5
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 4.6e-13 79.3 40 92.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 6.0e-13 79.0 51 74.5
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 6.0e-13 79.0 51 74.5
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 5.1e-12 75.9 42 88.1
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 2.1e-10 70.5 55 61.8
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.8e-10 70.1 54 55.6
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 6.2e-10 68.9 56 60.7
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.1e-09 68.2 81 43.2
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 1.1e-09 68.2 47 68.1
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 1.4e-09 67.8 42 73.8
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 3.1e-09 66.6 54 55.6
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.2e-09 65.9 40 72.5
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 6.4e-07 58.9 80 38.8


User provided reference genes

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