Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 6.1e-188 661.0 420 100.0
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 7.2e-88 328.6 271 71.2
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.5e-29 134.8 232 43.1
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 3.4e-29 133.7 308 40.6
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.3e-28 131.7 234 45.3
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 3.8e-28 130.2 248 40.3
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.1e-27 128.6 210 42.9
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.9e-27 127.9 236 44.9
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 3.2e-27 127.1 316 37.0
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.2e-26 125.2 307 38.8
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 1.6e-26 124.8 311 38.3
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 3.5e-26 123.6 239 39.3
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.0e-25 122.1 283 37.8
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.7e-25 121.3 230 43.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.7e-25 121.3 235 40.0
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 6.6e-25 119.4 265 40.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 6.6e-25 119.4 265 40.0
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 8.7e-25 119.0 209 41.1
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 1.1e-24 118.6 309 36.9
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 1.9e-24 117.9 186 40.3
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.3e-24 116.7 214 39.3
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.6e-24 116.3 214 39.7
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 7.3e-24 115.9 264 40.2
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 9.6e-24 115.5 265 41.5
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 9.6e-24 115.5 193 43.0
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 1.6e-23 114.8 297 36.7
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.6e-23 114.8 270 37.4
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.1e-23 114.4 252 37.7
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 2.8e-23 114.0 216 40.7
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 6.2e-23 112.8 186 42.5
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 8.1e-23 112.5 237 38.4
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 8.1e-23 112.5 196 40.8
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.1e-22 112.1 294 38.8
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 1.1e-22 112.1 269 39.0
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 1.4e-22 111.7 219 39.7
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.4e-22 111.7 214 38.3
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.4e-22 110.9 300 38.0
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 4.0e-22 110.2 450 36.4
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 4.0e-22 110.2 221 38.9
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 6.9e-22 109.4 333 32.7
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.2e-21 108.6 418 33.5
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.6e-21 107.5 226 40.3
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 2.6e-21 107.5 235 41.3
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.4e-21 107.1 255 36.9
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 4.5e-21 106.7 249 38.6
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.8e-20 103.6 266 39.1
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.1e-19 102.1 270 37.4
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.1e-19 102.1 336 33.6
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.4e-19 101.7 238 35.7
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.4e-19 101.7 331 34.1
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.4e-19 101.7 211 40.8
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.4e-19 100.9 221 38.5
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.2e-19 100.5 221 38.5
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 3.2e-19 100.5 277 36.1
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 9.3e-19 99.0 175 40.6
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.2e-18 98.6 193 37.8
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.1e-18 97.8 281 35.2
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.7e-18 97.4 299 30.1
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 3.5e-18 97.1 263 39.2
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.6e-18 96.7 221 38.0
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 6.0e-18 96.3 322 33.5
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.0e-18 96.3 322 33.5
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.0e-18 96.3 322 33.5
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.0e-17 95.5 205 36.1
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.0e-17 95.5 344 31.7
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.3e-17 95.1 315 33.7
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.0e-17 94.0 344 31.7
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.9e-17 93.6 319 32.0
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 5.1e-17 93.2 228 37.3
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 6.7e-17 92.8 249 36.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.5e-16 91.7 291 34.0
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.5e-16 91.7 329 31.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.9e-16 91.3 181 40.3
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 3.3e-16 90.5 228 35.1
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 4.3e-16 90.1 239 34.3
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 4.3e-16 90.1 127 45.7
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.6e-16 89.7 330 33.0
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.3e-15 88.6 284 33.8
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 4.8e-15 86.7 235 35.3
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 6.2e-15 86.3 201 38.8
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.1e-14 85.5 267 30.7
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.1e-14 84.0 315 30.8
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 9.0e-14 82.4 185 35.1
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 1.2e-13 82.0 242 32.6
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.2e-13 82.0 228 32.9
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.4e-13 80.5 329 30.4
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 4.5e-13 80.1 244 32.4
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 9.9e-13 79.0 242 32.6
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 9.9e-13 79.0 242 32.6
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 9.9e-13 79.0 306 34.3
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.3e-12 78.6 277 31.8
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.3e-12 78.6 339 31.0
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 1.7e-12 78.2 151 37.7
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 2.2e-12 77.8 329 30.1
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 2.2e-12 77.8 308 32.8
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 2.9e-12 77.4 118 44.1
Lj9C256T7 Lonicera japonica HOM05D012621 ORTHO05D004349 3.8e-12 77.0 126 41.3
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 3.8e-12 77.0 293 31.1
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 4.9e-12 76.6 109 39.4
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 4.9e-12 76.6 221 34.8
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 8.4e-12 75.9 263 32.3
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 8.4e-12 75.9 255 29.4
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 8.4e-12 75.9 144 36.8
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 8.4e-12 75.9 126 42.1
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 2.5e-11 74.3 236 33.1
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 3.2e-11 73.9 126 38.9
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 3.2e-11 73.9 126 38.9
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.2e-11 73.9 136 39.7
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 7.1e-11 72.8 129 40.3
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 9.3e-11 72.4 116 39.7
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 9.3e-11 72.4 116 39.7
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 1.2e-10 72.0 247 36.0
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 1.6e-10 71.6 243 31.7
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.1e-10 71.2 251 29.1
Lj8A559T40 Lonicera japonica HOM05D012621 ORTHO05D004349 2.1e-10 71.2 128 41.4
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 2.7e-10 70.9 191 33.5
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 2.7e-10 70.9 131 40.5
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 3.5e-10 70.5 134 38.8
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 4.6e-10 70.1 118 37.3
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 6.0e-10 69.7 178 29.8
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.0e-09 68.9 165 33.3
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 1.0e-09 68.9 109 39.4
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 2.3e-09 67.8 229 31.0
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 2.3e-09 67.8 123 39.0
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 3.9e-09 67.0 135 36.3
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 5.1e-09 66.6 229 30.6
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.1e-09 66.6 128 38.3
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 5.1e-09 66.6 256 30.5
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.7e-09 66.2 104 38.5
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 8.7e-09 65.9 114 39.5
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 8.7e-09 65.9 244 32.0
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-08 65.5 231 30.7
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.1e-08 65.5 309 26.2
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 1.1e-08 65.5 168 35.7
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.1e-08 65.5 105 39.0
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.1e-08 65.5 131 38.2
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-08 65.5 245 28.2
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 1.5e-08 65.1 201 31.8
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 1.5e-08 65.1 133 37.6
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.5e-08 65.1 104 37.5
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.5e-08 65.1 118 34.7
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 1.9e-08 64.7 260 30.0
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.9e-08 64.7 126 36.5
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.9e-08 64.7 106 39.6
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.9e-08 64.7 252 27.8
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 2.5e-08 64.3 236 37.3
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 3.3e-08 63.9 255 27.8
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 3.3e-08 63.9 144 35.4
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 4.3e-08 63.5 117 36.8
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 4.3e-08 63.5 275 29.5
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 5.6e-08 63.2 245 29.4
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 7.4e-08 62.8 278 29.9
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 7.4e-08 62.8 131 35.9
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 1.3e-07 62.0 146 35.6
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.3e-07 62.0 126 38.9
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 2.1e-07 61.2 291 29.6
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.8e-07 60.8 315 29.5
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 2.8e-07 60.8 121 33.9
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.8e-07 60.8 287 27.5
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 3.7e-07 60.5 110 35.5
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 3.7e-07 60.5 109 33.9
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 6.2e-07 59.7 117 39.3
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 6.2e-07 59.7 268 30.2
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 8.2e-07 59.3 104 38.5
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.1e-06 58.9 295 28.5
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 1.1e-06 58.9 309 26.9
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-06 58.9 261 29.5
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.1e-06 58.9 115 31.3
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.4e-06 58.5 119 36.1
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 1.4e-06 58.5 124 37.9
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.8e-06 58.2 179 27.9
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 3.1e-06 57.4 113 31.9
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 3.1e-06 57.4 284 28.5
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 4.0e-06 57.0 171 31.0
Sc23g0001950 Simmondsia chinensis HOM05D004242 ORTHO05D004349 4.0e-06 57.0 155 32.9
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 5.3e-06 56.6 168 29.2
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.3e-06 56.6 163 33.1
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 5.3e-06 56.6 126 31.7
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 6.9e-06 56.2 261 29.9
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 6.9e-06 56.2 126 32.5
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 9.0e-06 55.8 103 35.0


User provided reference genes

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