Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007862.1 Olea europaea HOM05D000404 ORTHO05D005791 1.3e-61 239.6 121 100.0
Oeu042397.1 Olea europaea HOM05D000404 ORTHO05D031269 1.3e-61 239.6 121 100.0
Oeu062885.1 Olea europaea HOM05D000404 ORTHO05D005791 1.8e-39 166.0 121 66.9
QL06p007345 Quercus lobata HOM05D000404 ORTHO05D005791 2.0e-38 162.5 110 72.7
Dinv38327 Davidia involucrata HOM05D000404 ORTHO05D005791 4.4e-38 161.4 125 68.8
Ciclev10004689m.g Citrus clementina HOM05D000404 ORTHO05D005791 3.7e-37 158.3 118 65.3
Cpa.g.sc16.112 Carica papaya HOM05D000404 ORTHO05D005791 6.3e-37 157.5 123 64.2
LjContig00389g0014251 Lotus japonicus HOM05D000404 ORTHO05D005791 1.1e-36 156.8 124 65.3
Thecc.04G277400 Theobroma cacao HOM05D000404 ORTHO05D005791 1.4e-36 156.4 124 63.7
Dinv44427 Davidia involucrata HOM05D000404 ORTHO05D005791 1.8e-36 156.0 125 66.4
Hma1.2p1_0823F.1_g224600 Hydrangea macrophylla HOM05D000404 ORTHO05D005791 2.4e-36 155.6 126 67.5
Actinidia00051 Actinidia chinensis HOM05D000404 ORTHO05D005791 4.1e-36 154.8 122 63.9
arahy.Tifrunner.gnm1.ann1.60DV95 Arachis hypogaea HOM05D000404 ORTHO05D005791 1.2e-35 153.3 125 65.6
CiPaw.01G153400 Carya illinoinensis HOM05D000404 ORTHO05D005791 2.0e-35 152.5 110 67.3
Duzib151G0511 Durio zibethinus HOM05D000404 ORTHO05D005791 2.7e-35 152.1 124 61.3
arahy.Tifrunner.gnm1.ann1.I36EUT Arachis hypogaea HOM05D000404 ORTHO05D005791 3.5e-35 151.8 125 64.8
Haze_01059 Corylus avellana HOM05D000404 ORTHO05D005791 7.8e-35 150.6 121 63.6
Cc03_g02380 Coffea canephora HOM05D000404 ORTHO05D005791 1.3e-34 149.8 121 60.3
TWI73G0089 Tripterygium wilfordii HOM05D000404 ORTHO05D005791 1.3e-34 149.8 121 64.5
Glyma.15G098100 Glycine max HOM05D000404 ORTHO05D005791 2.9e-34 148.7 125 63.2
CSS0040095 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 3.8e-34 148.3 125 64.0
Lj6A669G30 Lonicera japonica HOM05D000404 ORTHO05D005791 6.6e-34 147.5 122 62.3
Peaxi162Scf00386g00222 Petunia axillaris HOM05D000404 ORTHO05D005791 8.6e-34 147.1 122 63.1
Ca_00575_v3 Cicer arietinum L. HOM05D000404 ORTHO05D005791 1.1e-33 146.7 126 61.9
VMungo0540G0329 Vigna mungo HOM05D000404 ORTHO05D005791 1.1e-33 146.7 109 67.9
CSS0006318 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 1.5e-33 146.4 125 62.4
Cfa015494 Carpinus fangiana HOM05D000404 ORTHO05D005791 2.5e-33 145.6 124 62.9
Cfa015495 Carpinus fangiana HOM05D000404 ORTHO05D005791 3.3e-33 145.2 123 62.6
MD16G1175300 Malus domestica HOM05D000404 ORTHO05D005791 3.3e-33 145.2 124 60.5
RcHm_v2.0_Chr4g0420971 Rosa chinensis HOM05D000404 ORTHO05D005791 4.3e-33 144.8 106 64.2
MD13G1174000 Malus domestica HOM05D000404 ORTHO05D005791 7.3e-33 144.1 125 61.6
Sabra08G0157500 Salix brachista HOM05D000404 ORTHO05D005791 7.3e-33 144.1 123 61.8
Glyma.13G215000 Glycine max HOM05D000404 ORTHO05D005791 9.5e-33 143.7 125 60.8
Nitab4.5_0000191g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 9.5e-33 143.7 121 60.3
Potri.008G204200 Populus trichocarpa HOM05D000404 ORTHO05D005791 9.5e-33 143.7 123 60.2
FAN22G2151 Fragaria x ananassa HOM05D000404 ORTHO05D005791 1.6e-32 142.9 123 60.2
TAR365G0265 Trochodendron aralioides HOM05D000404 ORTHO05D005791 1.6e-32 142.9 128 61.7
FAN17G2506 Fragaria x ananassa HOM05D000404 ORTHO05D005791 2.1e-32 142.5 123 60.2
CANSAT78G2211 Cannabis sativa HOM05D000404 ORTHO05D005791 2.8e-32 142.1 99 69.7
MSTRG.10053 Avicennia marina HOM05D000404 ORTHO05D005791 3.6e-32 141.7 122 60.7
Phvul.006G161200 Phaseolus vulgaris HOM05D000404 ORTHO05D005791 3.6e-32 141.7 124 61.3
Nitab4.5_0000784g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 4.7e-32 141.4 122 60.7
FvH4_4g17180 Fragaria vesca HOM05D000404 ORTHO05D005791 6.1e-32 141.0 123 60.2
Psat1g187120 Pisum sativum HOM05D000404 ORTHO05D005791 6.1e-32 141.0 124 58.9
COL.COLO4_13931 Corchorus olitorius HOM05D000404 ORTHO05D005791 8.0e-32 140.6 126 60.3
Manes.03G191000 Manihot esculenta HOM05D000404 ORTHO05D005791 8.0e-32 140.6 124 58.9
Medtr2g020240 Medicago truncatula HOM05D000404 ORTHO05D005791 8.0e-32 140.6 124 60.5
FAN12G2473 Fragaria x ananassa HOM05D000404 ORTHO05D005791 1.0e-31 140.2 123 60.2
FAN12G3224 Fragaria x ananassa HOM05D000404 ORTHO05D005791 1.0e-31 140.2 123 60.2
Gorai.011G185700 Gossypium raimondii HOM05D000404 ORTHO05D005791 1.4e-31 139.8 124 56.5
Sopen01g029610 Solanum pennellii HOM05D000404 ORTHO05D005791 1.4e-31 139.8 121 59.5
TPR.G1496 Trifolium pratense HOM05D000404 ORTHO05D005791 2.3e-31 139.0 124 60.5
Gohir.D10G166400 Gossypium hirsutum HOM05D000404 ORTHO05D005791 3.0e-31 138.7 124 55.6
Solyc01g067660.3 Solanum lycopersicum HOM05D000404 ORTHO05D005791 4.0e-31 138.3 121 58.7
Duzib052G0769 Durio zibethinus HOM05D000404 ORTHO05D005791 5.2e-31 137.9 124 58.9
Prupe.1G142400 Prunus persica HOM05D000404 ORTHO05D005791 8.9e-31 137.1 104 65.4
Gohir.A10G101605 Gossypium hirsutum HOM05D000404 ORTHO05D005791 1.2e-30 136.7 124 54.8
CAN.G223.10 Capsicum annuum HOM05D000404 ORTHO05D005791 1.5e-30 136.3 121 58.7
FAN07G0337 Fragaria x ananassa HOM05D000404 ORTHO05D005791 1.5e-30 136.3 123 60.2
Nn4g26029 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.5e-30 136.3 113 64.6
Nn3g21297 Nelumbo nucifera HOM05D000404 ORTHO05D005791 3.4e-30 135.2 112 61.6
SalBow2G2518 Salvia bowleyana HOM05D000404 ORTHO05D005791 4.4e-30 134.8 122 59.8
PGSC0003DMG400010664 Solanum tuberosum HOM05D000404 ORTHO05D005791 4.4e-30 134.8 121 57.9
Atru.chr4.2752 Acer truncatum HOM05D000404 ORTHO05D005791 5.7e-30 134.4 127 59.8
Lalb_Chr18g0055731 Lupinus albus HOM05D000404 ORTHO05D005791 5.7e-30 134.4 104 63.5
ClCG06G005390 Citrullus lanatus HOM05D000404 ORTHO05D005791 2.4e-28 129.0 126 57.9
PSO170G0635 Papaver somniferum HOM05D000404 ORTHO05D005791 4.1e-28 128.3 122 57.4
Aqoxy237s002 Aquilegia oxysepala HOM05D000404 ORTHO05D031269 5.4e-28 127.9 127 54.3
Aqoxy2G03092 Aquilegia oxysepala HOM05D000404 ORTHO05D005791 5.4e-28 127.9 127 54.3
Sed0000536 Sechium edule HOM05D000404 ORTHO05D005791 7.0e-28 127.5 110 60.0
vmacro22596 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 7.0e-28 127.5 125 56.0
THA.LOC104827120 Tarenaya hassleriana HOM05D000404 ORTHO05D005791 9.2e-28 127.1 124 56.5
Eucgr.H03767 Eucalyptus grandis HOM05D000404 ORTHO05D005791 1.6e-27 126.3 124 52.4
HanXRQChr03g0080071 Helianthus annuus HOM05D000404 ORTHO05D005791 1.6e-27 126.3 119 53.8
Lalb_Chr20g0118131 Lupinus albus HOM05D000404 ORTHO05D005791 2.0e-27 125.9 104 58.7
PSO210G4605 Papaver somniferum HOM05D000404 ORTHO05D005791 2.0e-27 125.9 122 56.6
CsaV3_6G005730 Cucumis sativus L. HOM05D000404 ORTHO05D005791 1.3e-26 123.2 126 54.8
Lsat_1_v5_gn_5_50601 Lactuca sativa HOM05D000404 ORTHO05D005791 3.0e-26 122.1 121 50.4
DCAR_024613 Daucus carota HOM05D000404 ORTHO05D005791 1.5e-25 119.8 121 53.7
MBI18_g29028_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 4.3e-25 118.2 127 50.4
MELO3C021362.2 Cucumis melo HOM05D000404 ORTHO05D005791 5.6e-25 117.9 127 54.3
MBI18_g42097_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 7.3e-25 117.5 131 49.6
Sc13g0003610 Simmondsia chinensis HOM05D000404 ORTHO05D005791 1.2e-24 116.7 108 57.4
Gohir.D02G052000 Gossypium hirsutum HOM05D000404 ORTHO05D005791 4.7e-24 114.8 116 51.7
Gohir.A02G046300 Gossypium hirsutum HOM05D000404 ORTHO05D005791 1.0e-23 113.6 116 50.9
AL6G29950 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 1.8e-23 112.8 111 55.0
BraA03t10226Z Brassica rapa HOM05D000404 ORTHO05D005791 1.8e-23 112.8 111 55.0
Sp6g25670 Schrenkiella parvula HOM05D000404 ORTHO05D005791 2.3e-23 112.5 110 57.3
Thhalv10013215m.g Eutrema salsugineum HOM05D000404 ORTHO05D005791 4.0e-23 111.7 111 54.1
Gorai.005G057300 Gossypium raimondii HOM05D000404 ORTHO05D005791 4.0e-23 111.7 116 50.9
PGR015G0006 Punica granatum HOM05D000404 ORTHO05D005791 4.0e-23 111.7 127 52.0
PGR104G0002 Punica granatum HOM05D000404 ORTHO05D005791 4.0e-23 111.7 127 52.0
BcaB01g05257 Brassica carinata HOM05D000404 ORTHO05D005791 5.2e-23 111.3 111 55.0
A03p09020 Brassica napus HOM05D000404 ORTHO05D005791 5.2e-23 111.3 111 53.2
C03p10500 Brassica napus HOM05D000404 ORTHO05D005791 5.2e-23 111.3 111 55.0
BolC3t13532H Brassica oleracea HOM05D000404 ORTHO05D005791 5.2e-23 111.3 111 55.0
Lsat_1_v5_gn_5_50720 Lactuca sativa HOM05D000404 ORTHO05D005791 5.2e-23 111.3 123 47.2
AT5G18670 Arabidopsis thaliana HOM05D000404 ORTHO05D005791 6.8e-23 110.9 105 57.1
Hund24912 Selenicereus undatus HOM05D000404 ORTHO05D005791 6.8e-23 110.9 100 58.0
CARHR194330 Cardamine hirsuta HOM05D000404 ORTHO05D005791 2.0e-22 109.4 111 52.3
Aa31LG11G10950 Aethionema arabicum HOM05D000404 ORTHO05D005791 3.4e-22 108.6 125 51.2
ECA240G3803 Erigeron canadensis HOM05D000084 ORTHO05D000363 3.4e-22 108.6 121 47.9
Aqoxy179s005 Aquilegia oxysepala HOM05D000404 ORTHO05D031269 9.8e-22 107.1 102 55.9
Hund24913 Selenicereus undatus HOM05D000404 ORTHO05D005791 9.8e-22 107.1 100 56.0
Sc19g0004940 Simmondsia chinensis HOM05D000404 ORTHO05D005791 9.8e-22 107.1 125 54.4
C09p57790 Brassica napus HOM05D000404 ORTHO05D005791 2.9e-21 105.5 103 56.3
A10p20890 Brassica napus HOM05D000404 ORTHO05D005791 3.7e-21 105.1 99 58.6
BraA10t44154Z Brassica rapa HOM05D000404 ORTHO05D005791 3.7e-21 105.1 103 56.3
AL3G17330 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 2.4e-20 102.4 100 55.0
Carub.0006s1697 Capsella rubella HOM05D000404 ORTHO05D005791 2.4e-20 102.4 111 51.4
BcaC04g18656 Brassica carinata HOM05D000404 ORTHO05D005791 3.2e-20 102.1 103 55.3
BolC9t58648H Brassica oleracea HOM05D000404 ORTHO05D005791 3.2e-20 102.1 103 55.3
SalBow5G1198 Salvia bowleyana HOM05D000404 ORTHO05D005791 4.1e-20 101.7 104 50.0
SalBow5G2195 Salvia bowleyana HOM05D000404 ORTHO05D005791 4.1e-20 101.7 104 50.0
vmacro15257 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 1.6e-19 99.8 82 62.2
AUR62041243 Chenopodium quinoa HOM05D000404 ORTHO05D005791 2.0e-19 99.4 123 48.0
unitig_748.g8576 Utricularia gibba HOM05D000404 ORTHO05D005791 4.6e-19 98.2 90 57.8
AUR62014139 Chenopodium quinoa HOM05D000404 ORTHO05D005791 7.8e-19 97.4 123 47.2
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 1.3e-18 96.7 100 53.0
EL10Ac3g06555 Beta vulgaris HOM05D000404 ORTHO05D005791 1.7e-18 96.3 100 52.0
Migut.G00212 Erythranthe guttata HOM05D000404 ORTHO05D005791 1.7e-18 96.3 95 54.7
unitig_32.g11750 Utricularia gibba HOM05D000404 ORTHO05D005791 2.3e-18 95.9 91 56.0
CDE01G0466 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 2.1e-16 89.4 116 44.0
SGA_v2.0_scaffold142G35699 Striga asiatica HOM05D000404 ORTHO05D005791 2.1e-16 89.4 97 53.6
HPP92_013694 Vanilla planifolia HOM05D000404 ORTHO05D005791 3.6e-16 88.6 128 45.3
CDE12G0716 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 2.3e-15 85.9 117 43.6
CDE05G3429 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 2.0e-14 82.8 106 41.5
HanXRQChr03g0080091 Helianthus annuus HOM05D000404 ORTHO05D005791 4.4e-14 81.6 74 54.1
Zm00001eb330060 Zea mays HOM05D000404 ORTHO05D005791 4.9e-13 78.2 113 40.7
CARHR080910 Cardamine hirsuta HOM05D000404 ORTHO05D005791 1.6e-11 73.2 59 61.0
ATR0706G226 Amborella trichopoda HOM05D000404 ORTHO05D005791 1.0e-10 70.5 87 41.4
Os07g0667100 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005791 2.3e-10 69.3 92 41.3
Mapoly0044s0023 Marchantia polymorpha HOM05D000404 ORTHO05D001765 1.1e-09 67.0 109 36.7
SEGI_02091 Sequoiadendron giganteum HOM05D000404 ORTHO05D005791 4.3e-09 65.1 114 35.1
HPP92_005284 Vanilla planifolia HOM05D000404 ORTHO05D010006 4.0e-07 58.5 96 33.3
Zm00001eb394710 Zea mays HOM05D000404 ORTHO05D005791 8.9e-07 57.4 101 34.7
Zm00001eb016880 Zea mays HOM05D000404 ORTHO05D005791 2.0e-06 56.2 97 35.1
Zm00001eb016920 Zea mays HOM05D000404 ORTHO05D005791 2.0e-06 56.2 97 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2644 Anthoceros agrestis HOM05D000404 ORTHO05D001765 4.4e-06 55.1 102 30.4
Ciclev10004620m.g Citrus clementina HOM05D000404 ORTHO05D001765 5.8e-06 54.7 93 30.1
Zm00001eb222250 Zea mays HOM05D000404 ORTHO05D001765 5.8e-06 54.7 110 28.2
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 9.9e-06 53.9 93 30.1
Os03g0351300 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005791 9.9e-06 53.9 88 34.1
SEGI_31012 Sequoiadendron giganteum HOM05D000404 ORTHO05D001765 9.9e-06 53.9 99 31.3


User provided reference genes

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