Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 2.3e-129 465.7 224 100.0
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 7.8e-29 131.7 195 43.6
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 5.4e-22 109.0 174 46.6
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 9.2e-22 108.2 213 38.0
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.9e-19 100.5 90 55.6
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 2.8e-18 96.7 150 44.7
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 6.2e-18 95.5 149 43.6
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.4e-17 94.4 120 49.2
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 1.4e-17 94.4 154 41.6
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.8e-17 94.0 120 42.5
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 3.1e-17 93.2 158 38.6
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 5.2e-17 92.4 192 38.0
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 5.2e-17 92.4 145 44.1
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 6.8e-17 92.0 190 38.9
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 6.8e-17 92.0 100 50.0
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 8.9e-17 91.7 152 41.4
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 4.4e-16 89.4 135 41.5
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 7.5e-16 88.6 158 38.6
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 9.8e-16 88.2 118 45.8
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 4.9e-15 85.9 159 40.3
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 4.1e-14 82.8 102 45.1
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 5.4e-14 82.4 127 37.0
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 9.2e-14 81.6 115 42.6
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 1.2e-13 81.3 86 48.8
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 2.1e-13 80.5 107 42.1
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 2.1e-13 80.5 153 37.9
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 2.7e-13 80.1 93 44.1
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.7e-13 80.1 153 37.3
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.5e-13 79.7 146 37.7
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 3.5e-13 79.7 146 36.3
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 3.5e-13 79.7 108 45.4
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 4.6e-13 79.3 143 39.9
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 4.6e-13 79.3 153 35.3
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 4.6e-13 79.3 102 45.1
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 4.6e-13 79.3 157 39.5
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 6.0e-13 79.0 163 34.4
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 6.0e-13 79.0 185 34.6
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 7.8e-13 78.6 205 33.7
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 1.0e-12 78.2 135 40.0
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.0e-12 78.2 153 37.3
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 1.3e-12 77.8 151 37.7
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.7e-12 77.4 97 48.5
Migut.J01487 Erythranthe guttata HOM05D007262 ORTHO05D008524 1.7e-12 77.4 196 32.7
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 5.1e-12 75.9 125 37.6
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 5.1e-12 75.9 125 38.4
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.1e-11 74.7 142 39.4
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 3.3e-11 73.2 139 38.8
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 9.5e-11 71.6 133 36.1
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 2.1e-10 70.5 105 37.1
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 2.1e-10 70.5 138 36.2
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 6.2e-10 68.9 178 28.7
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 8.1e-10 68.6 113 38.1
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 1.8e-09 67.4 145 37.2
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 4.0e-09 66.2 64 54.7
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 4.0e-09 66.2 112 42.9
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 5.2e-09 65.9 106 41.5
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 6.8e-09 65.5 102 39.2
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 6.8e-09 65.5 132 39.4
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 2.0e-08 63.9 133 33.8
COL.COLO4_28647 Corchorus olitorius HOM05D015664 ORTHO05D008524 3.4e-08 63.2 158 31.6
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 3.4e-08 63.2 134 39.6
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 4.4e-08 62.8 136 39.0
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 5.8e-08 62.4 136 38.2
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 7.6e-08 62.0 76 43.4
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 9.9e-08 61.6 90 40.0
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 9.9e-08 61.6 150 34.0
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 9.9e-08 61.6 97 40.2
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 1.3e-07 61.2 76 42.1
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 1.3e-07 61.2 76 42.1
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.7e-07 60.8 155 31.6
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 1.7e-07 60.8 86 41.9
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 2.2e-07 60.5 120 35.0
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 2.2e-07 60.5 74 41.9
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 2.9e-07 60.1 81 44.4
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 3.7e-07 59.7 68 44.1
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.7e-07 59.7 91 38.5
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 3.7e-07 59.7 76 42.1
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 3.7e-07 59.7 87 37.9
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 4.9e-07 59.3 67 41.8
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 8.3e-07 58.5 66 39.4
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-06 58.2 88 39.8
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 1.1e-06 58.2 142 33.8
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.4e-06 57.8 62 50.0
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 1.4e-06 57.8 62 50.0
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.9e-06 57.4 148 30.4
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 2.4e-06 57.0 93 39.8
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.4e-06 57.0 121 30.6
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 3.2e-06 56.6 62 51.6
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 5.4e-06 55.8 75 44.0
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 5.4e-06 55.8 61 52.5
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 5.4e-06 55.8 69 40.6


User provided reference genes

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