Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 1.1e-72 276.6 141 100.0
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 2.8e-20 102.4 90 63.3
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 6.3e-20 101.3 90 63.3
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 6.3e-20 101.3 90 63.3
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 6.3e-20 101.3 61 83.6
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 8.2e-20 100.9 61 83.6
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 8.2e-20 100.9 61 83.6
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 8.2e-20 100.9 61 83.6
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 8.2e-20 100.9 61 83.6
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.1e-19 100.5 49 100.0
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.8e-19 99.8 89 61.8
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.8e-19 99.8 89 61.8
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 3.1e-19 99.0 49 98.0
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 4.1e-19 98.6 88 62.5
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 5.3e-19 98.2 61 82.0
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 5.3e-19 98.2 49 98.0
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 5.3e-19 98.2 61 82.0
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 5.3e-19 98.2 60 81.7
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 5.3e-19 98.2 65 73.8
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 6.9e-19 97.8 90 61.1
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.2e-18 97.1 48 97.9
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.2e-18 97.1 88 61.4
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.2e-18 97.1 61 82.0
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 1.2e-18 97.1 61 82.0
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.2e-18 97.1 61 82.0
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 1.2e-18 97.1 61 82.0
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 1.2e-18 97.1 90 61.1
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.2e-18 97.1 61 82.0
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 2.6e-18 95.9 90 61.1
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 4.5e-18 95.1 61 78.7
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.0e-17 94.0 61 80.3
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 1.3e-17 93.6 61 80.3
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 2.2e-17 92.8 61 77.0
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 8.5e-17 90.9 47 95.7
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 8.5e-17 90.9 47 95.7
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 3.2e-16 89.0 58 77.6
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 5.5e-16 88.2 90 57.8
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 5.5e-16 88.2 47 93.6
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 5.5e-16 88.2 47 93.6
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 5.5e-16 88.2 47 93.6
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 5.5e-16 88.2 47 93.6
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 5.5e-16 88.2 47 93.6
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 91.5
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 89.4
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.6e-15 86.7 44 97.7
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.6e-15 86.7 44 97.7
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 89.4
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 89.4
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.6e-15 86.7 47 89.4
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.1e-15 86.3 43 97.7
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 2.7e-15 85.9 47 91.5
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 3.6e-15 85.5 47 89.4
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 7.9e-15 84.3 47 89.4
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 7.9e-15 84.3 44 95.5
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.9e-15 84.3 47 87.2
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 7.9e-15 84.3 47 87.2
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.0e-14 84.0 47 87.2
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-14 83.6 47 87.2
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.8e-14 83.2 55 76.4
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 2.3e-14 82.8 47 87.2
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 2.3e-14 82.8 47 87.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.3e-14 82.8 92 55.4
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.3e-14 82.8 47 85.1
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.3e-14 82.8 95 55.8
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.3e-14 82.8 95 55.8
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 2.3e-14 82.8 95 55.8
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.2e-14 81.6 47 83.0
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 6.7e-14 81.3 47 85.1
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 6.7e-14 81.3 47 83.0
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 8.8e-14 80.9 47 83.0
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 1.1e-13 80.5 47 80.9
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 5.7e-13 78.2 92 54.3
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-13 78.2 61 68.9
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 7.4e-13 77.8 44 88.6
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.3e-09 67.0 43 74.4
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 8.8e-06 54.3 35 74.3


User provided reference genes

Program Settings