Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 9.9e-112 406.8 200 100.0
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 3.6e-77 292.0 184 78.3
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 2.6e-75 285.8 184 76.6
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 4.8e-74 281.6 168 81.0
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.1e-73 280.4 170 77.1
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.1e-73 280.4 181 76.2
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 3.1e-73 278.9 189 69.8
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 4.1e-73 278.5 186 74.2
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 4.1e-73 278.5 178 78.1
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.2e-72 276.9 189 74.6
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 3.4e-72 275.4 194 71.6
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 4.5e-72 275.0 190 71.6
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 5.9e-72 274.6 195 70.8
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 5.9e-72 274.6 189 74.6
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.7e-71 273.1 198 67.7
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.7e-71 273.1 184 74.5
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.2e-71 272.7 195 70.3
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.2e-71 272.7 194 71.1
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 3.8e-71 271.9 184 72.3
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.0e-71 271.6 186 72.6
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 6.5e-71 271.2 181 70.7
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 6.5e-71 271.2 200 66.5
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 8.5e-71 270.8 192 69.8
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 8.5e-71 270.8 187 72.2
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.1e-70 270.4 178 73.0
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.4e-70 270.0 182 70.3
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.9e-70 269.6 189 70.9
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 2.5e-70 269.2 193 71.0
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 3.2e-70 268.9 171 76.0
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.2e-70 268.9 183 72.7
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 4.2e-70 268.5 168 75.6
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 5.5e-70 268.1 187 71.7
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 9.4e-70 267.3 190 68.4
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.2e-69 266.9 180 72.8
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.2e-69 266.9 184 72.3
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.6e-69 266.5 178 75.3
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.6e-69 266.5 195 69.7
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 2.1e-69 266.2 182 70.9
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 2.1e-69 266.2 167 74.9
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 2.1e-69 266.2 181 69.1
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 3.6e-69 265.4 182 71.4
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 3.6e-69 265.4 182 71.4
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 3.6e-69 265.4 184 72.3
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 6.1e-69 264.6 194 69.6
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 7.9e-69 264.2 173 71.7
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 7.9e-69 264.2 188 70.7
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 7.9e-69 264.2 185 67.6
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 7.9e-69 264.2 166 75.9
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.0e-68 263.8 168 75.0
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 1.0e-68 263.8 168 75.0
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.0e-68 263.8 168 73.2
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 1.0e-68 263.8 191 70.2
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.4e-68 263.5 181 69.6
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.4e-68 263.5 181 69.6
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.8e-68 263.1 181 70.2
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 2.3e-68 262.7 191 68.6
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.3e-68 262.7 182 70.9
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.3e-68 262.7 169 75.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 3.0e-68 262.3 173 70.5
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 3.0e-68 262.3 182 70.3
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 3.0e-68 262.3 184 72.3
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.9e-68 261.9 167 76.6
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 5.2e-68 261.5 194 70.1
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 6.7e-68 261.2 167 73.7
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.1e-67 260.4 185 70.8
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.5e-67 260.0 181 69.6
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 2.0e-67 259.6 169 71.0
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 2.0e-67 259.6 169 71.0
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 2.0e-67 259.6 169 71.0
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.3e-67 258.8 183 68.9
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.4e-67 258.5 182 68.7
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.4e-67 258.5 182 68.7
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 4.4e-67 258.5 182 69.2
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 7.4e-67 257.7 179 68.2
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 7.4e-67 257.7 163 71.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 7.4e-67 257.7 174 71.3
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 9.7e-67 257.3 180 68.3
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 9.7e-67 257.3 169 74.0
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.7e-66 256.5 167 75.4
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 2.2e-66 256.1 181 68.0
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 3.7e-66 255.4 190 66.8
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 4.8e-66 255.0 188 68.1
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 6.3e-66 254.6 166 72.9
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 6.3e-66 254.6 171 68.4
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.1e-65 253.8 182 68.1
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.1e-65 253.8 185 66.5
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 4.1e-65 251.9 182 67.6
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 4.1e-65 251.9 186 66.1
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 5.3e-65 251.5 168 70.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 5.3e-65 251.5 185 68.6
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.2e-64 250.4 166 69.9
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 1.2e-64 250.4 174 69.5
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 7.7e-64 247.7 182 67.6
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 7.7e-64 247.7 182 67.6
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.5e-62 243.4 180 68.9
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.2e-62 242.3 185 66.5
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 4.2e-62 241.9 198 62.1
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.3e-60 236.1 168 66.7
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.6e-56 223.4 123 82.9
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 2.7e-56 222.6 185 58.9
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 3.5e-56 222.2 180 60.6
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.7e-55 219.9 161 64.0
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 3.2e-54 215.7 158 65.2
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 5.5e-54 214.9 172 61.6
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.2e-51 207.2 165 59.4
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.6e-51 206.1 200 54.5
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 4.4e-51 205.3 182 59.9
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 9.8e-51 204.1 182 59.3
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 4.1e-49 198.7 149 63.8
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 4.5e-48 195.3 151 63.6
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 6.5e-47 191.4 180 53.9
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 9.5e-46 187.6 121 71.9
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 9.5e-46 187.6 168 57.7
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.3e-44 183.0 120 70.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.2e-43 180.6 93 94.6
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 3.4e-43 179.1 144 59.0
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 3.7e-42 175.6 144 56.9
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 4.9e-42 175.3 148 58.8
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 8.3e-42 174.5 123 72.4
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 7.0e-41 171.4 110 74.5
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.0e-36 156.0 193 48.2
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.3e-34 150.6 131 51.9
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 5.0e-31 138.7 149 47.0
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 8.6e-31 137.9 82 78.0
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.9e-30 136.7 137 51.1
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 2.9e-26 122.9 153 43.1
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 3.7e-26 122.5 182 42.3
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 3.7e-26 122.5 182 42.3
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 3.2e-25 119.4 188 38.8
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 8.1e-21 104.8 76 67.1
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 2.3e-20 103.2 153 38.6
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 2.3e-20 103.2 153 38.6
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.9e-20 101.3 56 82.1
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 2.4e-17 93.2 115 39.1
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 7.1e-17 91.7 59 71.2
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 5.4e-09 65.5 55 52.7


User provided reference genes

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