Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 2.0e-121 439.1 226 100.0
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 5.5e-66 255.0 196 66.3
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.4e-61 240.4 216 62.0
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.4e-61 239.6 209 61.2
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 6.9e-61 238.0 178 66.9
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.5e-60 236.9 223 60.1
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.5e-60 236.9 224 58.5
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.0e-60 236.5 176 66.5
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 5.8e-60 235.0 207 59.9
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.7e-59 233.4 209 59.8
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.2e-59 233.0 172 66.3
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 3.8e-59 232.3 182 65.4
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.8e-59 232.3 215 58.1
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 4.9e-59 231.9 216 56.5
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.9e-58 229.9 187 63.6
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.9e-58 229.9 195 62.6
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.2e-58 228.8 220 56.8
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 4.2e-58 228.8 196 61.2
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 9.3e-58 227.6 198 61.6
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 9.3e-58 227.6 217 56.2
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.2e-57 227.3 194 63.4
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.6e-57 226.9 172 65.1
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 2.7e-57 226.1 172 65.7
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.0e-56 224.2 196 60.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.3e-56 223.8 210 58.1
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.3e-56 223.8 177 62.7
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.3e-56 223.8 215 58.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 3.0e-56 222.6 172 66.3
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 3.0e-56 222.6 213 53.1
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 8.7e-56 221.1 213 54.9
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 8.7e-56 221.1 186 60.2
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 8.7e-56 221.1 216 56.0
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 8.7e-56 221.1 187 61.5
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.5e-55 220.3 178 64.0
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.9e-55 219.9 179 65.9
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.5e-55 219.5 213 52.1
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.3e-55 219.2 217 55.3
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 3.3e-55 219.2 215 55.3
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 4.3e-55 218.8 177 63.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 4.3e-55 218.8 215 57.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.3e-54 217.2 178 63.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.6e-54 216.9 172 64.0
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.6e-54 216.9 172 64.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.6e-54 216.9 172 64.0
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.6e-54 216.9 199 56.3
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 2.1e-54 216.5 216 55.1
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.1e-54 216.5 195 61.5
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.1e-54 216.5 213 51.6
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.1e-54 216.5 179 63.1
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.8e-54 216.1 172 64.0
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 3.7e-54 215.7 215 56.3
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 4.8e-54 215.3 210 56.2
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 8.2e-54 214.5 181 66.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.4e-53 213.8 179 62.6
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.4e-53 213.8 178 60.1
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 2.4e-53 213.0 179 67.0
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 4.1e-53 212.2 177 61.6
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.1e-53 212.2 203 57.6
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.3e-53 211.8 177 59.9
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 9.0e-53 211.1 208 56.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 9.0e-53 211.1 208 55.8
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.2e-52 210.7 177 59.9
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.5e-52 210.3 178 60.7
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.5e-52 210.3 199 54.3
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.0e-52 209.9 178 62.4
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 2.0e-52 209.9 215 56.3
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.0e-52 209.9 182 63.2
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.6e-52 209.5 172 62.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 7.6e-52 208.0 214 55.1
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.0e-51 207.6 214 55.1
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.0e-51 207.6 216 55.6
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.0e-51 207.6 216 55.6
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.0e-51 207.6 216 56.9
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.3e-51 207.2 199 53.8
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-51 206.8 217 52.1
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 2.2e-51 206.5 174 61.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 2.9e-51 206.1 214 54.2
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 5.0e-51 205.3 179 64.8
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 8.4e-51 204.5 178 61.2
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 8.4e-51 204.5 216 56.9
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.5e-50 203.0 173 60.1
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 7.2e-50 201.4 164 62.8
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 2.1e-49 199.9 172 57.6
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 3.5e-49 199.1 178 57.3
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 6.1e-49 198.4 207 50.7
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.0e-48 197.6 230 52.2
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.3e-48 197.2 189 56.6
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 3.0e-48 196.1 207 50.2
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 3.9e-48 195.7 207 49.8
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 5.1e-48 195.3 194 54.6
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.9e-47 193.4 214 49.1
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.9e-47 193.4 182 61.5
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.3e-46 190.7 211 49.8
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.8e-46 189.5 178 56.7
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.2e-44 184.1 214 50.5
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.7e-43 180.3 175 56.6
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.9e-43 179.5 181 57.5
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.8e-43 179.1 193 50.8
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 5.0e-43 178.7 193 50.8
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 6.5e-43 178.3 181 57.5
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.2e-42 175.6 173 56.1
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 5.5e-42 175.3 186 54.3
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 5.5e-42 175.3 180 55.6
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 3.6e-41 172.6 180 52.2
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.0e-40 171.0 185 50.8
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.7e-39 165.2 179 49.2
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.7e-38 163.7 174 50.0
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.2e-38 163.3 174 50.0
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.8e-38 162.9 174 50.6
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 3.7e-38 162.5 174 49.4
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.1e-37 161.0 174 48.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-37 160.6 188 46.8
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.4e-37 160.6 188 46.3
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 6.9e-37 158.3 174 47.7
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.6e-36 156.4 171 48.5
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.3e-35 154.1 174 48.3
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.7e-35 153.7 175 46.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.7e-35 153.7 174 48.3
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 5.5e-34 148.7 178 44.9
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 9.4e-34 147.9 150 50.7
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.6e-33 146.0 177 43.5
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 4.7e-33 145.6 197 42.1
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 3.9e-32 142.5 123 61.8
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 6.7e-32 141.7 177 44.6
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 6.7e-32 141.7 198 42.4
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 3.3e-31 139.4 193 41.5
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-29 134.4 159 48.4
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.4e-29 134.0 177 42.4
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.4e-29 134.0 177 41.8
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 5.3e-29 132.1 183 41.5
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 7.0e-29 131.7 189 40.7
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.3e-27 127.5 192 42.7
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 3.8e-27 125.9 170 40.6
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 2.5e-26 123.2 161 43.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.5e-26 123.2 161 43.5
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 7.2e-26 121.7 161 42.9
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 7.2e-26 121.7 161 42.9
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 2.7e-25 119.8 152 44.1
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.8e-24 117.1 85 69.4
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 8.2e-22 108.2 128 50.8
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 2.4e-21 106.7 132 48.5
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 8.3e-14 81.6 179 32.4
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.4e-13 79.0 60 66.7
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.7e-11 73.9 121 44.6
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 2.9e-11 73.2 129 34.9
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 8.5e-11 71.6 62 50.0
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.5e-10 70.9 70 47.1
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.5e-10 70.9 70 47.1
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 9.4e-10 68.2 83 38.6
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.2e-09 67.8 88 40.9
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 4.7e-09 65.9 65 49.2
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 4.7e-09 65.9 65 49.2
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 4.7e-09 65.9 65 49.2
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 8.8e-08 61.6 54 55.6
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 7.5e-07 58.5 54 48.1


User provided reference genes

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