Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.7e-99 365.9 178 100.0
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.7e-86 322.8 168 91.7
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 4.6e-84 314.7 170 87.1
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 4.6e-84 314.7 170 87.1
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 4.6e-84 314.7 170 87.1
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.0e-83 313.5 170 86.5
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 5.0e-83 311.2 170 86.5
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 5.0e-83 311.2 170 86.5
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 8.6e-83 310.5 170 84.7
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.9e-82 309.3 170 85.9
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.8e-81 305.4 170 84.1
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.1e-80 303.5 170 84.1
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.4e-80 303.1 166 86.7
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.3e-80 302.4 170 83.5
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 3.4e-79 298.5 170 81.8
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 4.4e-79 298.1 170 81.8
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 7.5e-79 297.4 173 82.1
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 9.9e-79 297.0 170 80.6
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 4.9e-78 294.7 169 84.0
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 6.4e-78 294.3 170 80.6
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.4e-77 293.1 170 81.8
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 9.2e-77 290.4 170 78.8
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.6e-76 289.7 170 78.8
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.1e-76 289.3 170 78.2
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 7.8e-76 287.3 166 81.9
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.0e-75 287.0 168 79.8
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.0e-75 285.4 170 78.2
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 3.9e-75 285.0 170 77.6
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 3.9e-75 285.0 171 78.4
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 5.1e-75 284.6 170 80.0
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 6.6e-75 284.3 171 78.4
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.1e-74 283.5 167 82.6
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 1.1e-74 283.5 170 79.4
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.9e-74 282.7 171 78.9
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 4.3e-74 281.6 170 76.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 5.6e-74 281.2 170 78.8
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 7.3e-74 280.8 171 77.8
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 7.3e-74 280.8 171 77.8
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 1.2e-73 280.0 171 77.8
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.2e-73 280.0 170 79.4
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.1e-73 279.3 169 78.7
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 2.8e-73 278.9 170 77.6
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 3.6e-73 278.5 172 76.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 3.6e-73 278.5 171 78.4
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.6e-73 278.5 170 76.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 4.7e-73 278.1 167 79.6
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 8.1e-73 277.3 172 78.5
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.1e-72 276.9 170 77.6
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.1e-72 276.9 170 78.2
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.4e-72 276.6 166 77.1
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.4e-72 276.6 171 75.4
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 2.3e-72 275.8 175 76.6
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 2.3e-72 275.8 173 74.6
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.1e-72 275.4 170 77.1
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.1e-72 275.4 170 77.1
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 4.0e-72 275.0 170 77.1
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 1.2e-71 273.5 171 75.4
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 2.6e-71 272.3 177 76.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 3.4e-71 271.9 173 73.4
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 4.4e-71 271.6 171 76.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 7.6e-71 270.8 171 73.7
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 7.6e-71 270.8 170 74.7
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.3e-70 270.0 170 75.3
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.2e-70 269.2 170 75.3
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 2.2e-70 269.2 171 75.4
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 2.9e-70 268.9 171 75.4
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 3.8e-70 268.5 166 77.1
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 3.8e-70 268.5 170 74.7
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.9e-70 268.1 173 72.8
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.9e-70 268.1 154 82.5
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 4.9e-70 268.1 170 75.9
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 8.4e-70 267.3 167 75.4
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 8.4e-70 267.3 171 74.9
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.4e-69 266.5 173 71.1
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.4e-69 266.5 170 72.4
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 2.4e-69 265.8 170 71.8
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.4e-69 265.8 166 76.5
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 3.2e-69 265.4 170 71.8
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 3.2e-69 265.4 170 74.7
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 4.1e-69 265.0 172 72.1
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 5.4e-69 264.6 155 82.6
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.4e-69 264.6 170 75.3
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 9.2e-69 263.8 169 72.2
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 1.2e-68 263.5 179 69.8
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 1.2e-68 263.5 179 69.8
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.6e-68 263.1 169 72.2
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.6e-68 263.1 170 71.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.6e-68 263.1 170 70.0
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.6e-68 263.1 170 72.4
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.1e-68 262.7 170 74.1
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 3.5e-68 261.9 171 72.5
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 4.6e-68 261.5 170 71.2
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 7.8e-68 260.8 171 71.9
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.0e-67 260.4 170 73.5
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.3e-67 260.0 170 70.0
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.3e-67 260.0 170 72.9
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-67 259.6 172 70.9
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.0e-67 258.8 171 70.8
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.9e-67 258.5 171 70.8
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 5.1e-67 258.1 171 70.8
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.1e-67 258.1 171 70.8
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.1e-67 258.1 171 73.1
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 6.6e-67 257.7 170 71.2
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.6e-67 257.7 154 81.2
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.1e-66 256.9 170 69.4
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.3e-66 255.0 170 70.6
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 9.6e-66 253.8 169 71.6
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 9.6e-66 253.8 166 70.5
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-65 253.4 170 69.4
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 2.1e-65 252.7 222 59.5
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.6e-65 251.9 167 71.3
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.1e-65 250.8 167 70.7
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 8.1e-65 250.8 172 70.3
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.1e-64 250.4 166 69.3
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.4e-64 250.0 168 70.2
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.4e-64 250.0 169 70.4
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.4e-64 249.2 172 66.9
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 6.9e-64 247.7 158 72.8
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 9.0e-64 247.3 173 68.2
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 2.0e-63 246.1 158 72.2
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 3.4e-63 245.4 170 68.8
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 3.4e-63 245.4 158 74.1
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 5.8e-63 244.6 161 73.3
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.3e-62 243.4 170 68.8
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 6.4e-62 241.1 166 69.9
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 6.4e-62 241.1 171 66.7
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 8.4e-62 240.7 170 67.1
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.1e-61 237.7 167 67.7
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 6.0e-60 234.6 170 65.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.3e-59 233.4 168 65.5
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.7e-59 233.0 171 62.6
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.5e-58 229.9 154 70.1
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.6e-57 225.3 169 62.7
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.8e-56 223.0 168 63.7
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.4e-56 222.6 167 64.1
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 7.6e-55 217.6 117 85.5
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 7.6e-55 217.6 117 85.5
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 3.9e-51 205.3 119 81.5
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 8.1e-49 197.6 118 79.7
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.1e-48 197.2 138 68.8
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.3e-46 190.3 117 73.5
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.4e-46 187.6 117 74.4
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.9e-43 178.7 116 75.9
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 3.3e-42 175.6 184 48.9
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 6.0e-36 154.8 167 49.7
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.9e-36 154.5 98 70.4
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.1e-35 151.8 100 71.0
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 3.3e-34 149.1 119 60.5
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.3e-33 147.1 105 65.7
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.9e-29 133.3 93 71.0
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.8e-25 119.4 114 56.1
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.3e-22 110.5 119 46.2
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 3.8e-22 109.0 186 38.2
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 5.5e-21 105.1 156 36.5
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 9.4e-21 104.4 60 73.3
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.7e-20 102.1 117 47.0
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.7e-19 98.2 128 42.2
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 8.2e-17 91.3 90 51.1
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 4.1e-16 89.0 50 82.0
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.9e-14 82.8 50 78.0
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.6e-12 75.9 50 70.0
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 4.7e-12 75.5 48 70.8
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.8e-11 73.6 64 60.9
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 2.2e-06 56.6 36 77.8


User provided reference genes

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