Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040868.1 Olea europaea HOM05D003274 ORTHO05D003714 1.8e-21 105.5 78 100.0
Medtr4g057565 Medicago truncatula HOM05D003274 ORTHO05D003714 2.9e-14 81.6 76 84.2
arahy.Tifrunner.gnm1.ann1.A7H879 Arachis hypogaea HOM05D003274 ORTHO05D003714 6.3e-14 80.5 77 84.4
Psat7g149280 Pisum sativum HOM05D003274 ORTHO05D003714 6.3e-14 80.5 76 80.3
CAN.G546.24 Capsicum annuum HOM05D003274 ORTHO05D003714 8.3e-14 80.1 65 66.2
arahy.Tifrunner.gnm1.ann1.RYV3A9 Arachis hypogaea HOM05D003274 ORTHO05D003714 1.1e-13 79.7 76 82.9
Nitab4.5_0000329g0200 Nicotiana tabacum HOM05D003274 ORTHO05D003714 1.1e-13 79.7 65 95.4
Nitab4.5_0016407g0010 Nicotiana tabacum HOM05D003274 ORTHO05D003714 1.1e-13 79.7 65 95.4
Solyc11g066260.2 Solanum lycopersicum HOM05D003274 ORTHO05D003714 1.1e-13 79.7 76 81.6
Sopen11g026000 Solanum pennellii HOM05D003274 ORTHO05D003714 1.1e-13 79.7 76 81.6
PGSC0003DMG400000449 Solanum tuberosum HOM05D003274 ORTHO05D003714 1.1e-13 79.7 76 81.6
Glyma.06G211400 Glycine max HOM05D003274 ORTHO05D003714 1.4e-13 79.3 65 90.8
Ca_19311_v3 Cicer arietinum L. HOM05D003274 ORTHO05D003714 1.8e-13 79.0 76 80.3
SalBow4G3301 Salvia bowleyana HOM05D003274 ORTHO05D003714 1.8e-13 79.0 76 81.6
arahy.Tifrunner.gnm1.ann1.2XGG6Y Arachis hypogaea HOM05D003274 ORTHO05D003714 2.4e-13 78.6 76 82.9
arahy.Tifrunner.gnm1.ann1.R6Y7HN Arachis hypogaea HOM05D003274 ORTHO05D003714 2.4e-13 78.6 76 82.9
Glyma.04G151500 Glycine max HOM05D003274 ORTHO05D003714 2.4e-13 78.6 76 78.9
HanXRQChr04g0103601 Helianthus annuus HOM05D003274 ORTHO05D003714 2.4e-13 78.6 65 80.0
Phvul.011G085100 Phaseolus vulgaris HOM05D003274 ORTHO05D003714 2.4e-13 78.6 76 78.9
SGA_v2.0_scaffold277G46690 Striga asiatica HOM05D003274 ORTHO05D003714 2.4e-13 78.6 65 92.3
VMungo1127G1114 Vigna mungo HOM05D003274 ORTHO05D003714 2.4e-13 78.6 76 78.9
Lj3g0011566 Lotus japonicus HOM05D003274 ORTHO05D003714 3.2e-13 78.2 76 78.9
Phvul.L001682 Phaseolus vulgaris HOM05D003274 ORTHO05D003714 3.2e-13 78.2 63 92.1
SGA_v2.0_scaffold436G51602 Striga asiatica HOM05D003274 ORTHO05D003714 4.1e-13 77.8 70 84.3
Lalb_Chr01g0004551 Lupinus albus HOM05D003274 ORTHO05D003714 5.4e-13 77.4 65 90.8
MSTRG.18696 Avicennia marina HOM05D003274 ORTHO05D003714 9.2e-13 76.6 76 81.6
TPR.G25654 Trifolium pratense HOM05D003274 ORTHO05D003714 9.2e-13 76.6 76 78.9
CAN.G1432.14 Capsicum annuum HOM05D003274 ORTHO05D003714 1.2e-12 76.3 65 89.2
Lalb_Chr03g0027661 Lupinus albus HOM05D003274 ORTHO05D003714 1.2e-12 76.3 65 89.2
Solyc06g074840.3 Solanum lycopersicum HOM05D003274 ORTHO05D003714 1.2e-12 76.3 65 90.8
Sopen06g031270 Solanum pennellii HOM05D003274 ORTHO05D003714 1.2e-12 76.3 65 90.8
PGSC0003DMG400007136 Solanum tuberosum HOM05D003274 ORTHO05D003714 1.2e-12 76.3 65 90.8
Nitab4.5_0001163g0120 Nicotiana tabacum HOM05D003274 ORTHO05D003714 1.6e-12 75.9 65 89.2
Nitab4.5_0002001g0020 Nicotiana tabacum HOM05D003274 ORTHO05D003714 1.6e-12 75.9 65 89.2
TPR.G21105 Trifolium pratense HOM05D003274 ORTHO05D003714 1.6e-12 75.9 76 52.6
Cc01_g10420 Coffea canephora HOM05D003274 ORTHO05D003714 2.0e-12 75.5 76 80.3
ECA233G5403 Erigeron canadensis HOM05D003274 ORTHO05D003714 2.0e-12 75.5 65 89.2
Migut.D02268 Erythranthe guttata HOM05D003274 ORTHO05D003714 2.7e-12 75.1 65 92.3
Gohir.D04G005200 Gossypium hirsutum HOM05D003274 ORTHO05D003714 2.7e-12 75.1 76 77.6
Gorai.011G235800 Gossypium raimondii HOM05D003274 ORTHO05D003714 2.7e-12 75.1 76 77.6
Gorai.012G006500 Gossypium raimondii HOM05D003274 ORTHO05D003714 2.7e-12 75.1 76 77.6
QL01p015396 Quercus lobata HOM05D003274 ORTHO05D003714 2.7e-12 75.1 65 76.9
Aqoxy1G01133 Aquilegia oxysepala HOM05D003274 ORTHO05D003714 4.6e-12 74.3 65 86.2
Duzib106G1403 Durio zibethinus HOM05D003274 ORTHO05D003714 7.8e-12 73.6 76 76.3
Glyma.12G080000 Glycine max HOM05D003274 ORTHO05D003714 7.8e-12 73.6 76 76.3
BcaB01g04684 Brassica carinata HOM05D003274 ORTHO05D003714 1.0e-11 73.2 65 89.2
Lsat_1_v5_gn_6_44161 Lactuca sativa HOM05D003274 ORTHO05D003714 1.0e-11 73.2 65 75.4
Atru.chr3.3534 Acer truncatum HOM05D003274 ORTHO05D003714 1.3e-11 72.8 76 76.3
Sp6g22440 Schrenkiella parvula HOM05D003274 ORTHO05D003714 1.3e-11 72.8 65 87.7
TWI79G0911 Tripterygium wilfordii HOM05D003274 ORTHO05D003714 1.3e-11 72.8 66 56.1
AL6G34090 Arabidopsis lyrata HOM05D003274 ORTHO05D003714 1.7e-11 72.4 76 76.3
AT5G22950 Arabidopsis thaliana HOM05D003274 ORTHO05D003714 1.7e-11 72.4 76 76.3
BcaC01g06560 Brassica carinata HOM05D003274 ORTHO05D003714 1.7e-11 72.4 65 87.7
A03p10970 Brassica napus HOM05D003274 ORTHO05D003714 1.7e-11 72.4 65 87.7
C03p12630 Brassica napus HOM05D003274 ORTHO05D003714 1.7e-11 72.4 65 87.7
BolC3t13731H Brassica oleracea HOM05D003274 ORTHO05D003714 1.7e-11 72.4 65 87.7
BraA03t10407Z Brassica rapa HOM05D003274 ORTHO05D003714 1.7e-11 72.4 65 87.7
CARHR190580 Cardamine hirsuta HOM05D003274 ORTHO05D003714 1.7e-11 72.4 76 76.3
CsaV3_1G013580 Cucumis sativus L. HOM05D003274 ORTHO05D003714 1.7e-11 72.4 76 77.6
Thhalv10014580m.g Eutrema salsugineum HOM05D003274 ORTHO05D003714 1.7e-11 72.4 76 76.3
Lsat_1_v5_gn_1_62640 Lactuca sativa HOM05D003274 ORTHO05D003714 1.7e-11 72.4 76 75.0
MD00G1032300 Malus domestica HOM05D003274 ORTHO05D003714 1.7e-11 72.4 65 84.6
Ciclev10029212m.g Citrus clementina HOM05D003274 ORTHO05D003714 2.3e-11 72.0 76 76.3
Gohir.A03G029800 Gossypium hirsutum HOM05D003274 ORTHO05D003714 2.9e-11 71.6 65 87.7
Gohir.D03G138700 Gossypium hirsutum HOM05D003274 ORTHO05D003714 2.9e-11 71.6 65 87.7
Gorai.003G145500 Gossypium raimondii HOM05D003274 ORTHO05D003714 2.9e-11 71.6 65 87.7
TAR623G0611 Trochodendron aralioides HOM05D003274 ORTHO05D003714 2.9e-11 71.6 65 60.0
ATR0723G021 Amborella trichopoda HOM05D003274 ORTHO05D003714 3.9e-11 71.2 65 78.5
Carub.0006s2073 Capsella rubella HOM05D003274 ORTHO05D003714 3.9e-11 71.2 65 86.2
MELO3C004945.2 Cucumis melo HOM05D003274 ORTHO05D003714 3.9e-11 71.2 76 60.5
BcaB08g36387 Brassica carinata HOM05D003274 ORTHO05D003714 5.0e-11 70.9 76 75.0
A10p18080 Brassica napus HOM05D003274 ORTHO05D003714 8.6e-11 70.1 76 75.0
BraA10t43883Z Brassica rapa HOM05D003274 ORTHO05D003714 8.6e-11 70.1 76 76.3
TWI31G0037 Tripterygium wilfordii HOM05D003274 ORTHO05D003714 1.9e-10 68.9 65 55.4
CSS0018307 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 2.5e-10 68.6 65 87.7
CSS0030722 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 2.5e-10 68.6 65 87.7
Thecc.10G085700 Theobroma cacao HOM05D003274 ORTHO05D003714 2.5e-10 68.6 76 73.7
Ah.08g216240 Amaranthus hybridus HOM05D003274 ORTHO05D003714 3.3e-10 68.2 76 73.7
ClCG03G002800 Citrullus lanatus HOM05D003274 ORTHO05D003714 3.3e-10 68.2 63 85.7
Duzib150G1519 Durio zibethinus HOM05D003274 ORTHO05D003714 3.3e-10 68.2 65 81.5
FvH4_3g30890 Fragaria vesca HOM05D003274 ORTHO05D003714 3.3e-10 68.2 76 76.3
FAN21G3294 Fragaria x ananassa HOM05D003274 ORTHO05D003714 3.3e-10 68.2 76 76.3
FAN25G1779 Fragaria x ananassa HOM05D003274 ORTHO05D003714 3.3e-10 68.2 76 76.3
RcHm_v2.0_Chr5g0057111 Rosa chinensis HOM05D003274 ORTHO05D003714 3.3e-10 68.2 76 76.3
Manes.04G014101 Manihot esculenta HOM05D003274 ORTHO05D003714 4.3e-10 67.8 65 86.2
Cpa.g.sc1.15 Carica papaya HOM05D003274 ORTHO05D003714 5.6e-10 67.4 76 75.0
Pp3c9_19830 Physcomitrium patens HOM05D003274 ORTHO05D003714 5.6e-10 67.4 76 71.1
Dinv34732 Davidia involucrata HOM05D003274 ORTHO05D003714 7.3e-10 67.0 65 83.1
MD11G1146600 Malus domestica HOM05D003274 ORTHO05D003714 7.3e-10 67.0 65 84.6
Zm00001eb321340 Zea mays HOM05D003274 ORTHO05D003714 7.3e-10 67.0 65 53.8
Atru.chr12.859 Acer truncatum HOM05D003274 ORTHO05D003714 9.5e-10 66.6 76 75.0
Eucgr.B03938 Eucalyptus grandis HOM05D003274 ORTHO05D003714 9.5e-10 66.6 76 75.0
Prupe.2G208100 Prunus persica HOM05D003274 ORTHO05D003714 9.5e-10 66.6 76 51.3
Actinidia32108 Actinidia chinensis HOM05D003274 ORTHO05D003714 1.2e-09 66.2 65 83.1
Nn2g13817 Nelumbo nucifera HOM05D003274 ORTHO05D003714 1.2e-09 66.2 76 72.4
Lj4g0007028 Lotus japonicus HOM05D003274 ORTHO05D003714 1.6e-09 65.9 79 48.1
Prupe.6G109700 Prunus persica HOM05D003274 ORTHO05D003714 1.6e-09 65.9 65 84.6
GSVIVG01031487001 Vitis vinifera HOM05D003274 ORTHO05D003714 1.6e-09 65.9 65 84.6
Manes.11G151400 Manihot esculenta HOM05D003274 ORTHO05D003714 2.1e-09 65.5 76 72.4
Actinidia21723 Actinidia chinensis HOM05D003274 ORTHO05D003714 2.8e-09 65.1 65 81.5
MBI18_g42726_MAGBIO Magnolia biondii HOM05D003274 ORTHO05D003714 3.6e-09 64.7 65 56.9
PGR142G0129 Punica granatum HOM05D003274 ORTHO05D003714 3.6e-09 64.7 76 64.5
Rhsim01G0211400 Rhododendron simsii HOM05D003274 ORTHO05D003714 3.6e-09 64.7 65 52.3
Sed0002530 Sechium edule HOM05D003274 ORTHO05D003714 3.6e-09 64.7 76 75.0
C09p53640 Brassica napus HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 63.2
BolC9t58239H Brassica oleracea HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 63.2
FvH4_7g18680 Fragaria vesca HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 47.4
FAN01G1914 Fragaria x ananassa HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 47.4
FAN03G0690 Fragaria x ananassa HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 52.6
FAN06G1450 Fragaria x ananassa HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 47.4
FAN06G2043 Fragaria x ananassa HOM05D003274 ORTHO05D003714 4.7e-09 64.3 65 50.8
FAN10G0869 Fragaria x ananassa HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 47.4
Mapoly0195s0002 Marchantia polymorpha HOM05D003274 ORTHO05D003714 4.7e-09 64.3 65 84.6
Os07g0479400 Oryza sativa ssp. japonica HOM05D003274 ORTHO05D003714 4.7e-09 64.3 67 50.7
PSO063G0736 Papaver somniferum HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 69.7
PSO339G3703 Papaver somniferum HOM05D003274 ORTHO05D003714 4.7e-09 64.3 76 69.7
Aqoxy2G01722 Aquilegia oxysepala HOM05D003274 ORTHO05D003714 6.2e-09 63.9 65 80.0
QL08p054176 Quercus lobata HOM05D003274 ORTHO05D003714 6.2e-09 63.9 76 64.5
Thecc.09G349700 Theobroma cacao HOM05D003274 ORTHO05D003714 6.2e-09 63.9 65 83.1
Ciclev10032656m.g Citrus clementina HOM05D003274 ORTHO05D003714 8.0e-09 63.5 76 72.4
RcHm_v2.0_Chr1g0362411 Rosa chinensis HOM05D003274 ORTHO05D003714 8.0e-09 63.5 76 46.1
Zm00001eb000670 Zea mays HOM05D003274 ORTHO05D003714 8.0e-09 63.5 76 55.3
BcaC05g27943 Brassica carinata HOM05D003274 ORTHO05D003714 1.0e-08 63.2 76 48.7
C05p39460 Brassica napus HOM05D003274 ORTHO05D003714 1.0e-08 63.2 76 48.7
Potri.008G034700 Populus trichocarpa HOM05D003274 ORTHO05D003714 1.0e-08 63.2 76 71.1
AUR62009827 Chenopodium quinoa HOM05D003274 ORTHO05D003714 1.4e-08 62.8 76 50.0
COL.COLO4_11113 Corchorus olitorius HOM05D003274 ORTHO05D003714 1.8e-08 62.4 65 52.3
DCAR_015514 Daucus carota HOM05D003274 ORTHO05D003714 1.8e-08 62.4 76 60.5
Potri.004G215500 Populus trichocarpa HOM05D003274 ORTHO05D003714 1.8e-08 62.4 76 69.7
Actinidia24139 Actinidia chinensis HOM05D003274 ORTHO05D003714 2.3e-08 62.0 65 81.5
CANSAT56G3857 Cannabis sativa HOM05D003274 ORTHO05D003714 2.3e-08 62.0 76 65.8
Haze_16745 Corylus avellana HOM05D003274 ORTHO05D003714 2.3e-08 62.0 76 46.1
Dinv29366 Davidia involucrata HOM05D003274 ORTHO05D003714 3.1e-08 61.6 65 81.5
HanXRQChr01g0019541 Helianthus annuus HOM05D003274 ORTHO05D003714 4.0e-08 61.2 65 81.5
TWI63G1596 Tripterygium wilfordii HOM05D003274 ORTHO05D003714 4.0e-08 61.2 76 67.1
COL.COLO4_36536 Corchorus olitorius HOM05D003274 ORTHO05D003714 5.2e-08 60.8 102 40.2
Os03g0108400 Oryza sativa ssp. japonica HOM05D003274 ORTHO05D003714 5.2e-08 60.8 76 55.3
Migut.N02565 Erythranthe guttata HOM05D003274 ORTHO05D003714 6.8e-08 60.5 71 47.9
PSO017G5390 Papaver somniferum HOM05D003274 ORTHO05D003714 6.8e-08 60.5 76 67.1
C08p42890 Brassica napus HOM05D003274 ORTHO05D003714 8.9e-08 60.1 76 47.4
CSS0017437 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 8.9e-08 60.1 76 71.1
CSS0044730 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 8.9e-08 60.1 76 71.1
Gohir.A10G202200 Gossypium hirsutum HOM05D003274 ORTHO05D003714 8.9e-08 60.1 76 71.1
MD01G1102500 Malus domestica HOM05D003274 ORTHO05D003714 8.9e-08 60.1 76 42.1
Sabra08G0023100 Salix brachista HOM05D003274 ORTHO05D003714 8.9e-08 60.1 84 45.2
THA.LOC104810876 Tarenaya hassleriana HOM05D003274 ORTHO05D003714 8.9e-08 60.1 76 68.4
Peaxi162Scf00892g00008 Petunia axillaris HOM05D003274 ORTHO05D003714 1.5e-07 59.3 28 96.4
PGR102G1455 Punica granatum HOM05D003274 ORTHO05D003714 1.5e-07 59.3 76 71.1
THA.LOC104799520 Tarenaya hassleriana HOM05D003274 ORTHO05D003714 2.0e-07 58.9 65 78.5
BNapus_Darmor_BZH_scaffold_38p00230 Brassica napus HOM05D003274 ORTHO05D003714 2.6e-07 58.5 76 69.7
C02p11410 Brassica napus HOM05D003274 ORTHO05D003714 2.6e-07 58.5 76 69.7
Nn6g35260 Nelumbo nucifera HOM05D003274 ORTHO05D003714 2.6e-07 58.5 76 69.7
Sc09g0006030 Simmondsia chinensis HOM05D003274 ORTHO05D003714 2.6e-07 58.5 65 80.0
BcaC03g13933 Brassica carinata HOM05D003274 ORTHO05D003714 4.4e-07 57.8 76 65.8
BolC2t07215H Brassica oleracea HOM05D003274 ORTHO05D003714 4.4e-07 57.8 76 65.8
EL10Ac7g16339 Beta vulgaris HOM05D003274 ORTHO05D003714 5.8e-07 57.4 91 40.7
CiPaw.01G268000 Carya illinoinensis HOM05D003274 ORTHO05D003714 5.8e-07 57.4 76 63.2
Hund20851 Selenicereus undatus HOM05D003274 ORTHO05D003714 5.8e-07 57.4 77 45.5
TAR636G2234 Trochodendron aralioides HOM05D003274 ORTHO05D003714 5.8e-07 57.4 65 78.5
Aa31LG4G14140 Aethionema arabicum HOM05D003274 ORTHO05D003714 7.5e-07 57.0 89 41.6
AUR62038139 Chenopodium quinoa HOM05D003274 ORTHO05D003714 7.5e-07 57.0 88 42.0
SEGI_32844 Sequoiadendron giganteum HOM05D003274 ORTHO05D003714 4.9e-06 54.3 65 78.5
BraA02t05701Z Brassica rapa HOM05D003274 ORTHO05D003714 6.4e-06 53.9 77 68.8
Rhsim13G0099900 Rhododendron simsii HOM05D003274 ORTHO05D003714 6.4e-06 53.9 73 68.5
AagrBONN_evm.TU.Sc2ySwM_368.224 Anthoceros agrestis HOM05D003274 ORTHO05D003714 8.3e-06 53.5 65 75.4


User provided reference genes

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