Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040820.1 Olea europaea HOM05D003118 ORTHO05D003618 7.8e-239 830.1 431 100.0
MSTRG.13862 Avicennia marina HOM05D003118 ORTHO05D003618 1.2e-85 321.2 434 49.8
Dinv37591 Davidia involucrata HOM05D003118 ORTHO05D003618 9.7e-64 248.4 456 42.5
Dinv38896 Davidia involucrata HOM05D003118 ORTHO05D003618 1.8e-62 244.2 474 41.4
CSS0022485 Camellia sinensis var. sinensis HOM05D003118 ORTHO05D003618 1.0e-60 238.4 483 41.6
Cc08_g15310 Coffea canephora HOM05D003118 ORTHO05D003618 1.6e-58 231.1 464 40.9
SalBow8G1076 Salvia bowleyana HOM05D003118 ORTHO05D003618 8.0e-58 228.8 409 41.6
Actinidia28342 Actinidia chinensis HOM05D003118 ORTHO05D003618 3.4e-56 223.4 472 38.6
Peaxi162Scf00102g01644 Petunia axillaris HOM05D003118 ORTHO05D003618 4.0e-49 199.9 442 36.4
Nitab4.5_0005339g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 5.2e-49 199.5 455 36.5
Migut.E01210 Erythranthe guttata HOM05D003118 ORTHO05D003618 3.8e-44 183.3 407 38.1
Hma1.2p1_0216F.1_g091120 Hydrangea macrophylla HOM05D003118 ORTHO05D003618 5.0e-44 183.0 469 36.0
Duzib205G0707 Durio zibethinus HOM05D003118 ORTHO05D003618 1.6e-42 177.9 461 32.3
Cfa012251 Carpinus fangiana HOM05D003118 ORTHO05D003618 8.0e-42 175.6 439 33.9
Haze_08748 Corylus avellana HOM05D003118 ORTHO05D003618 1.0e-41 175.3 439 34.6
Lj2A177T50 Lonicera japonica HOM05D003118 ORTHO05D003618 7.5e-40 169.1 398 38.4
TAR629G1012 Trochodendron aralioides HOM05D003118 ORTHO05D003618 3.7e-39 166.8 449 34.5
Solyc08g008130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 4.9e-39 166.4 446 35.2
Thecc.03G287000 Theobroma cacao HOM05D003118 ORTHO05D003618 4.9e-39 166.4 465 33.8
Haze_08750 Corylus avellana HOM05D003118 ORTHO05D003618 8.3e-39 165.6 439 32.8
TAR375G0293 Trochodendron aralioides HOM05D003118 ORTHO05D003618 3.2e-38 163.7 429 34.3
vmacro11412 Vaccinium macrocarpon HOM05D003118 ORTHO05D003618 9.2e-38 162.2 465 33.5
QL02p033307 Quercus lobata HOM05D003118 ORTHO05D003618 5.9e-37 159.5 457 35.2
QL93p0326_0020 Quercus lobata HOM05D003118 ORTHO05D003618 5.9e-37 159.5 457 35.2
Nitab4.5_0002231g0040 Nicotiana tabacum HOM05D003118 ORTHO05D003618 7.8e-37 159.1 451 33.3
Sopen08g003990 Solanum pennellii HOM05D003118 ORTHO05D003618 1.0e-36 158.7 446 34.3
Gorai.004G137500 Gossypium raimondii HOM05D003118 ORTHO05D003618 1.7e-36 157.9 436 34.2
Rhsim02G0236100 Rhododendron simsii HOM05D003118 ORTHO05D003618 1.5e-35 154.8 475 34.3
Nn6g32462 Nelumbo nucifera HOM05D003118 ORTHO05D003618 4.0e-33 146.7 402 34.3
Gohir.A08G114000 Gossypium hirsutum HOM05D003118 ORTHO05D003618 6.4e-31 139.4 361 35.2
COL.COLO4_08355 Corchorus olitorius HOM05D003118 ORTHO05D003618 1.9e-30 137.9 415 32.8
Gohir.D08G134400 Gossypium hirsutum HOM05D003118 ORTHO05D003618 1.9e-30 137.9 408 33.6
Atru.chr9.2107 Acer truncatum HOM05D003118 ORTHO05D003618 3.2e-30 137.1 397 33.8
TWI81G0015 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 3.2e-30 137.1 461 31.7
FAN13G0863 Fragaria x ananassa HOM05D003118 ORTHO05D003618 9.2e-30 135.6 428 31.8
Manes.02G016600 Manihot esculenta HOM05D003118 ORTHO05D003618 1.7e-28 131.3 435 32.2
FAN18G4078 Fragaria x ananassa HOM05D003118 ORTHO05D003618 3.0e-28 130.6 424 31.6
FvH4_5g03250 Fragaria vesca HOM05D003118 ORTHO05D003618 6.6e-28 129.4 424 31.6
RcHm_v2.0_Chr7g0196521 Rosa chinensis HOM05D003118 ORTHO05D003618 6.6e-28 129.4 431 32.9
Prupe.5G107000 Prunus persica HOM05D003118 ORTHO05D003618 2.5e-27 127.5 448 31.2
Potri.003G133000 Populus trichocarpa HOM05D003118 ORTHO05D003618 7.3e-27 125.9 456 31.4
MD14G1112600 Malus domestica HOM05D003118 ORTHO05D003618 9.5e-27 125.6 461 32.3
FAN04G2118 Fragaria x ananassa HOM05D003118 ORTHO05D003618 4.7e-26 123.2 417 30.5
FAN04G2035 Fragaria x ananassa HOM05D003118 ORTHO05D003618 8.1e-26 122.5 417 30.5
Oeu042365.1 Olea europaea HOM05D003118 ORTHO05D003618 8.1e-26 122.5 694 25.4
MD06G1091800 Malus domestica HOM05D003118 ORTHO05D003618 1.1e-25 122.1 463 31.7
DCAR_004609 Daucus carota HOM05D003118 ORTHO05D003618 1.4e-25 121.7 367 32.7
FAN08G3653 Fragaria x ananassa HOM05D003118 ORTHO05D003618 6.8e-25 119.4 412 30.6
PGSC0003DMG402005827 Solanum tuberosum HOM05D003118 ORTHO05D003618 7.5e-24 115.9 354 34.5
MBI07_g11721_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 6.4e-23 112.8 409 29.6
Lalb_Chr09g0320801 Lupinus albus HOM05D003118 ORTHO05D003618 8.3e-23 112.5 390 29.5
DCAR_000636 Daucus carota HOM05D003118 ORTHO05D003618 5.4e-22 109.8 433 31.6
Ciclev10024541m.g Citrus clementina HOM05D003118 ORTHO05D003618 7.1e-22 109.4 443 30.9
Sabra03G0095300 Salix brachista HOM05D003118 ORTHO05D003618 2.7e-21 107.5 450 29.3
ClCG01G002310 Citrullus lanatus HOM05D003118 ORTHO05D003618 7.8e-21 105.9 427 31.4
MELO3C005717.2 Cucumis melo HOM05D003118 ORTHO05D003618 1.0e-20 105.5 425 31.1
Sed0003885 Sechium edule HOM05D003118 ORTHO05D003618 1.7e-20 104.8 414 29.2
Sed0011553 Sechium edule HOM05D003118 ORTHO05D003618 1.7e-20 104.8 427 29.7
CsaV3_5G002370 Cucumis sativus L. HOM05D003118 ORTHO05D003618 2.3e-20 104.4 431 30.6
SGA_v2.0_scaffold144G35901 Striga asiatica HOM05D003118 ORTHO05D003618 3.9e-20 103.6 368 30.7
Aqoxy7G00197 Aquilegia oxysepala HOM05D003118 ORTHO05D003618 5.1e-20 103.2 426 30.3
SGA_v2.0_scaffold173G39132 Striga asiatica HOM05D003118 ORTHO05D003618 2.1e-18 97.8 371 27.2
LjContig00312_ERROPOS870357g0013212 Lotus japonicus HOM05D003118 ORTHO05D003618 1.5e-16 91.7 380 27.6
Ah.12g051980 Amaranthus hybridus HOM05D003118 ORTHO05D003618 7.6e-16 89.4 390 29.0
arahy.Tifrunner.gnm1.ann1.78DXCF Arachis hypogaea HOM05D003118 ORTHO05D003618 7.6e-16 89.4 388 28.4
TWI14G1154 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 3.7e-15 87.0 477 28.7
Psat2g183920 Pisum sativum HOM05D003118 ORTHO05D003618 8.4e-15 85.9 400 27.5
LjContig00312_ERROPOS870357g0002156 Lotus japonicus HOM05D003118 ORTHO05D003618 3.2e-14 84.0 391 26.3
VMungo1215G2430 Vigna mungo HOM05D003118 ORTHO05D003618 4.1e-14 83.6 386 28.0
Ca_24533_v3 Cicer arietinum L. HOM05D003118 ORTHO05D003618 5.4e-14 83.2 399 26.1
Medtr5g009920 Medicago truncatula HOM05D003118 ORTHO05D003618 5.4e-14 83.2 400 27.5
Hund14265 Selenicereus undatus HOM05D003118 ORTHO05D003618 7.1e-14 82.8 436 31.0
Ah.12g052020 Amaranthus hybridus HOM05D003118 ORTHO05D003618 1.2e-13 82.0 390 27.7
TPR.G6616 Trifolium pratense HOM05D003118 ORTHO05D003618 1.6e-13 81.6 362 26.8
Glyma.11G020900 Glycine max HOM05D003118 ORTHO05D003618 2.1e-13 81.3 410 25.1
CiPaw.12G088800 Carya illinoinensis HOM05D003118 ORTHO05D003618 3.5e-13 80.5 411 27.7
Haze_15568 Corylus avellana HOM05D003118 ORTHO05D003618 1.0e-12 79.0 351 28.8
EL10Ac5g12842 Beta vulgaris HOM05D003118 ORTHO05D003618 5.1e-12 76.6 353 28.6
arahy.Tifrunner.gnm1.ann1.9S2WM4 Arachis hypogaea HOM05D003118 ORTHO05D003618 1.5e-11 75.1 378 26.7
Phvul.002G160400 Phaseolus vulgaris HOM05D003118 ORTHO05D003618 1.9e-11 74.7 396 25.8
Glyma.01G222500 Glycine max HOM05D003118 ORTHO05D003618 9.6e-11 72.4 414 26.1
Cfa003868 Carpinus fangiana HOM05D003118 ORTHO05D003618 1.6e-10 71.6 348 28.7
PGR042G1679 Punica granatum HOM05D003118 ORTHO05D003618 2.8e-10 70.9 410 27.1
Actinidia27617 Actinidia chinensis HOM05D003118 ORTHO05D003618 4.7e-10 70.1 144 36.1
Lsat_1_v5_gn_6_84940 Lactuca sativa HOM05D003118 ORTHO05D003618 1.1e-09 68.9 353 28.3
CANSAT21G1093 Cannabis sativa HOM05D003118 ORTHO05D003618 6.8e-09 66.2 372 28.5
Sc01g0009900 Simmondsia chinensis HOM05D003118 ORTHO05D003618 8.9e-09 65.9 397 26.2
CiPaw.11G129400 Carya illinoinensis HOM05D003118 ORTHO05D003618 2.0e-08 64.7 83 51.8
Cc02_g38610 Coffea canephora HOM05D003118 ORTHO05D003618 2.0e-08 64.7 73 50.7
PSO266G0031 Papaver somniferum HOM05D003118 ORTHO05D003618 2.0e-08 64.7 446 24.9
PSO384G4267 Papaver somniferum HOM05D003118 ORTHO05D003618 2.0e-08 64.7 446 24.7
Hund11431 Selenicereus undatus HOM05D003118 ORTHO05D003618 5.8e-08 63.2 443 27.1
HanXRQChr17g0533861 Helianthus annuus HOM05D003118 ORTHO05D003618 3.8e-07 60.5 153 34.0
AUR62019759 Chenopodium quinoa HOM05D003118 ORTHO05D003618 6.4e-07 59.7 145 33.8
Lsat_1_v5_gn_3_11501 Lactuca sativa HOM05D003118 ORTHO05D003618 6.4e-07 59.7 373 26.8
PSO384G4225 Papaver somniferum HOM05D003118 ORTHO05D003618 1.9e-06 58.2 360 26.9
AUR62010758 Chenopodium quinoa HOM05D003118 ORTHO05D003618 3.2e-06 57.4 351 25.9
HanXRQChr06g0166221 Helianthus annuus HOM05D003118 ORTHO05D003618 3.2e-06 57.4 332 26.5


User provided reference genes

Program Settings