Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.6e-29 132.1 68 100.0
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 4.4e-19 97.4 52 96.2
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.4e-17 92.4 52 88.5
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 3.1e-17 91.3 52 88.5
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 4.1e-17 90.9 63 79.4
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 4.1e-17 90.9 52 90.4
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 5.3e-17 90.5 52 84.6
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 5.3e-17 90.5 52 84.6
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 5.3e-17 90.5 52 84.6
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 7.0e-17 90.1 52 88.5
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 9.1e-17 89.7 52 84.6
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 1.6e-16 89.0 52 88.5
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 1.6e-16 89.0 52 88.5
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.6e-16 89.0 52 92.3
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 1.6e-16 89.0 52 92.3
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 1.6e-16 89.0 52 92.3
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 2.0e-16 88.6 52 84.6
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 2.0e-16 88.6 52 84.6
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 4.5e-16 87.4 52 88.5
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 4.5e-16 87.4 52 88.5
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 4.5e-16 87.4 52 88.5
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 4.5e-16 87.4 52 88.5
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 5.9e-16 87.0 52 90.4
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 7.7e-16 86.7 52 90.4
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 7.7e-16 86.7 52 90.4
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 7.7e-16 86.7 52 90.4
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.0e-15 86.3 52 86.5
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.0e-15 86.3 52 86.5
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.0e-15 86.3 52 88.5
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.0e-15 86.3 52 88.5
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.7e-15 85.5 52 88.5
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 2.2e-15 85.1 52 90.4
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 2.2e-15 85.1 52 86.5
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.2e-15 85.1 52 88.5
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 2.2e-15 85.1 52 86.5
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 3.8e-15 84.3 52 86.5
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 3.8e-15 84.3 52 86.5
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 3.8e-15 84.3 52 88.5
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 3.8e-15 84.3 52 86.5
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.8e-15 84.3 52 88.5
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 3.8e-15 84.3 52 84.6
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 3.8e-15 84.3 52 88.5
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 84.6
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 86.5
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 86.5
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 86.5
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 86.5
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 86.5
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 86.5
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 88.5
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 5.0e-15 84.0 52 86.5
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 88.5
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 88.5
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 88.5
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 88.5
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 88.5
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 6.5e-15 83.6 61 77.0
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 84.6
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 6.5e-15 83.6 52 86.5
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 84.6
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 8.5e-15 83.2 52 86.5
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 8.5e-15 83.2 54 81.5
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.1e-14 82.8 52 84.6
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.1e-14 82.8 52 84.6
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.1e-14 82.8 52 88.5
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 1.5e-14 82.4 52 86.5
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.5e-14 82.4 52 84.6
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 1.5e-14 82.4 52 84.6
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.5e-14 82.4 52 86.5
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 86.5
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 86.5
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 86.5
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 86.5
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 86.5
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.9e-14 82.0 52 84.6
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 86.5
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 82.7
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 80.8
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 84.6
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 2.5e-14 81.6 52 82.7
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.2e-14 81.3 52 86.5
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.2e-14 81.3 52 82.7
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 3.2e-14 81.3 52 86.5
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 4.2e-14 80.9 52 86.5
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 4.2e-14 80.9 52 84.6
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 5.5e-14 80.5 52 84.6
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.5e-14 80.5 52 84.6
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 5.5e-14 80.5 52 80.8
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 5.5e-14 80.5 52 86.5
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 5.5e-14 80.5 52 84.6
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 7.2e-14 80.1 52 82.7
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 7.2e-14 80.1 52 84.6
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 7.2e-14 80.1 54 75.9
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 7.2e-14 80.1 52 82.7
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 9.4e-14 79.7 52 84.6
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 9.4e-14 79.7 52 82.7
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 9.4e-14 79.7 52 80.8
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 9.4e-14 79.7 52 80.8
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 9.4e-14 79.7 52 80.8
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 9.4e-14 79.7 52 80.8
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 1.6e-13 79.0 52 82.7
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.6e-13 79.0 52 82.7
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.6e-13 79.0 52 80.8
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 2.1e-13 78.6 52 78.8
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 2.7e-13 78.2 52 80.8
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 4.7e-13 77.4 61 72.1
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 6.1e-13 77.0 51 82.4
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 8.0e-13 76.6 52 78.8
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 1.8e-12 75.5 52 75.0
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 4.0e-12 74.3 48 83.3
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 6.8e-12 73.6 52 73.1
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.2e-11 72.8 52 80.8
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.0e-11 72.0 52 73.1
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.6e-11 71.6 52 73.1
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 7.5e-11 70.1 52 80.8
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 7.5e-11 70.1 41 87.8
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 9.8e-11 69.7 51 72.5
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 9.8e-11 69.7 45 84.4
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.8e-09 65.5 45 82.2
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 3.1e-09 64.7 37 91.9
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 7.2e-06 53.5 58 55.2


User provided reference genes

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