Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 5.7e-157 557.8 329 100.0
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 3.8e-68 262.7 316 52.2
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.7e-58 229.9 311 52.7
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.1e-56 224.6 320 49.4
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.6e-53 213.4 318 50.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 3.5e-53 213.0 317 47.3
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.9e-52 209.9 320 42.8
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 2.9e-52 209.9 173 67.1
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 3.8e-52 209.5 313 50.8
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.6e-50 203.0 318 47.8
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 6.1e-50 202.2 315 45.4
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.0e-49 201.4 316 48.7
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.8e-47 193.4 319 43.9
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 8.2e-47 191.8 311 44.7
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 3.8e-44 183.0 328 43.6
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 6.5e-44 182.2 321 44.2
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.5e-43 181.0 329 47.4
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 2.5e-43 180.3 271 50.6
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 3.2e-43 179.9 324 44.4
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 4.2e-43 179.5 360 41.1
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 5.5e-43 179.1 300 43.3
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.8e-41 174.1 314 42.4
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 6.8e-41 172.2 314 43.6
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 2.0e-40 170.6 366 42.6
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.6e-40 170.2 383 41.3
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.6e-40 170.2 338 39.9
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.1e-38 164.9 326 40.2
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 3.1e-38 163.3 349 39.0
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.0e-38 162.2 337 42.4
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 1.2e-37 161.4 360 40.6
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.6e-37 161.0 345 42.0
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.0e-37 160.6 337 42.1
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 5.9e-37 159.1 384 39.6
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.9e-36 156.8 327 46.5
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 5.0e-36 156.0 341 37.5
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 5.0e-36 156.0 353 39.1
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.1e-35 154.8 303 37.6
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 9.5e-35 151.8 318 38.1
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 9.5e-35 151.8 320 39.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.1e-34 150.6 336 38.1
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.8e-34 150.2 324 38.6
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.0e-33 146.7 356 36.5
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.2e-32 144.8 335 39.4
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 2.6e-32 143.7 298 39.3
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 7.5e-32 142.1 332 38.3
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-31 141.4 324 39.8
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 1.3e-31 141.4 307 43.0
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.7e-31 141.0 187 53.5
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.7e-31 141.0 331 42.6
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.8e-31 140.2 324 39.5
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 8.3e-31 138.7 329 37.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 2.4e-30 137.1 335 40.9
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 2.4e-30 137.1 318 39.6
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.4e-30 137.1 316 37.7
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 9.2e-30 135.2 321 37.1
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.2e-29 134.8 319 37.0
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.6e-29 134.4 265 37.7
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 3.5e-29 133.3 319 41.7
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 5.9e-29 132.5 330 33.3
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 7.8e-29 132.1 327 37.6
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 7.8e-29 132.1 345 40.9
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 1.7e-28 131.0 266 35.3
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 2.3e-28 130.6 330 41.8
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 2.9e-28 130.2 323 35.6
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 3.8e-28 129.8 334 38.6
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.9e-27 127.5 323 38.7
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 5.6e-27 125.9 327 34.6
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.1e-26 124.0 328 36.0
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 4.7e-26 122.9 346 39.9
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 4.7e-26 122.9 292 36.0
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 4.7e-26 122.9 292 36.0
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 6.1e-26 122.5 325 36.3
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 1.8e-25 120.9 352 33.2
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.3e-25 120.6 324 35.8
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 3.1e-25 120.2 320 36.6
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 5.2e-25 119.4 324 34.6
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 2.0e-24 117.5 319 36.7
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.0e-24 117.5 216 39.8
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 9.8e-24 115.2 331 34.4
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-23 114.8 286 31.8
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.7e-23 114.4 286 31.8
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 4.9e-23 112.8 343 32.1
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-22 111.3 286 30.8
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.2e-22 110.2 325 35.1
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 3.2e-22 110.2 339 32.7
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 1.3e-20 104.8 267 37.5
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.7e-20 104.4 360 31.7
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 5.0e-20 102.8 214 36.0
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.0e-20 102.8 360 31.9
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 5.0e-20 102.8 309 31.1
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 5.0e-20 102.8 305 31.5
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 6.6e-20 102.4 357 32.2
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 2.5e-19 100.5 339 31.9
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 5.6e-19 99.4 307 30.9
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 7.3e-19 99.0 366 29.0
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 9.5e-19 98.6 361 32.7
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 9.5e-19 98.6 357 32.5
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.2e-18 98.2 352 37.8
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 4.7e-18 96.3 362 30.4
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 1.4e-17 94.7 309 34.6
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.4e-17 94.7 309 36.2
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 1.4e-17 94.7 309 34.6
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 1.4e-17 94.7 309 34.6
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.4e-17 94.7 313 35.1
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 5.2e-17 92.8 320 34.7
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 6.8e-17 92.4 294 38.8
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.5e-16 91.3 308 33.4
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 2.0e-16 90.9 212 34.4
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 2.6e-16 90.5 172 51.2
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 6.4e-15 85.9 304 34.9
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.3e-15 85.5 356 30.3
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 2.4e-14 84.0 330 33.3
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.4e-14 84.0 168 39.9
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 7.0e-14 82.4 310 31.6
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 7.0e-14 82.4 309 34.6
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.6e-13 79.7 225 31.6
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 6.0e-13 79.3 308 28.2
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 1.3e-12 78.2 198 32.8
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.3e-12 78.2 198 32.8
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 1.3e-12 78.2 340 31.5
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 6.6e-12 75.9 298 31.2
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 1.5e-11 74.7 197 32.5
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 3.3e-11 73.6 193 32.6
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 5.6e-11 72.8 167 37.7
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.5e-11 72.0 110 43.6
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 1.2e-10 71.6 191 34.0
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 1.2e-10 71.6 189 32.3
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 2.1e-10 70.9 191 34.6
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 2.1e-10 70.9 338 30.5
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 8.1e-10 68.9 273 31.9
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 1.8e-09 67.8 340 28.2
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 6.8e-09 65.9 189 34.9
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.2e-08 65.1 310 28.7
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 2.0e-08 64.3 189 32.8
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 2.0e-08 64.3 189 32.8
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 9.9e-08 62.0 218 34.9
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 8.3e-07 58.9 273 29.3
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.1e-06 58.5 88 40.9
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 4.1e-06 56.6 193 27.5
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.4e-06 56.2 194 25.8
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.4e-06 56.2 194 25.8
Zm00001eb108270 Zea mays HOM05D013881 ORTHO05D016369 9.2e-06 55.5 183 26.8


User provided reference genes

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