Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 8.5e-44 179.9 86 100.0
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 3.1e-14 81.6 78 55.1
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 5.4e-14 80.9 88 48.9
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.6e-13 79.3 82 51.2
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.6e-13 79.3 87 50.6
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.5e-13 78.2 89 49.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.9e-13 77.4 90 44.4
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 5.9e-13 77.4 73 56.2
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.9e-13 77.4 78 51.3
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 7.7e-13 77.0 94 46.8
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.3e-12 76.3 83 48.2
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 2.3e-12 75.5 84 51.2
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.8e-12 74.7 82 50.0
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-11 73.2 89 46.1
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.1e-11 73.2 80 47.5
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.9e-11 72.4 94 43.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.9e-11 72.4 79 50.6
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.9e-11 72.4 91 47.3
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.9e-11 72.4 95 48.4
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.5e-11 72.0 90 43.3
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 2.5e-11 72.0 85 50.6
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.5e-11 72.0 95 45.3
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 3.3e-11 71.6 90 46.7
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.3e-11 71.6 89 48.3
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 3.3e-11 71.6 90 43.3
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.3e-11 71.6 94 44.7
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.3e-11 71.6 86 46.5
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 3.3e-11 71.6 84 48.8
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.3e-11 71.6 87 48.3
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 4.2e-11 71.2 85 49.4
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.2e-11 71.2 85 49.4
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.5e-11 70.9 85 47.1
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 7.2e-11 70.5 88 46.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.5e-11 70.1 80 45.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.5e-11 70.1 85 49.4
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.5e-11 70.1 85 49.4
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 9.5e-11 70.1 89 44.9
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.5e-11 70.1 83 50.6
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.2e-10 69.7 84 48.8
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-10 69.3 95 44.2
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-10 68.9 94 43.6
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 2.1e-10 68.9 79 49.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.8e-10 68.6 86 41.9
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 2.8e-10 68.6 78 48.7
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.6e-10 68.2 94 42.6
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.6e-10 68.2 97 42.3
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 3.6e-10 68.2 89 42.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.6e-10 68.2 97 41.2
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 4.7e-10 67.8 83 44.6
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.1e-10 67.4 97 40.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 6.1e-10 67.4 103 45.6
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 6.1e-10 67.4 84 44.0
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 6.1e-10 67.4 92 44.6
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.1e-10 67.4 95 44.2
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.0e-10 67.0 83 45.8
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.0e-10 67.0 88 43.2
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.0e-10 67.0 96 39.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 8.0e-10 67.0 80 45.0
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 8.0e-10 67.0 87 42.5
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.0e-09 66.6 95 44.2
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.0e-09 66.6 94 42.6
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.0e-09 66.6 87 43.7
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-09 66.2 88 42.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.4e-09 66.2 95 45.3
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.8e-09 65.9 89 42.7
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-09 65.9 89 41.6
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.8e-09 65.9 103 40.8
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 2.3e-09 65.5 79 45.6
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.3e-09 65.5 88 43.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.3e-09 65.5 95 41.1
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.0e-09 65.1 87 47.1
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.0e-09 65.1 92 42.4
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.0e-09 64.7 89 42.7
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.2e-09 64.3 88 39.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 5.2e-09 64.3 77 44.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.2e-09 64.3 85 37.6
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 5.2e-09 64.3 96 41.7
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.2e-09 64.3 100 45.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 6.8e-09 63.9 91 40.7
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 6.8e-09 63.9 85 40.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 6.8e-09 63.9 85 40.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.8e-09 63.9 88 43.2
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 6.8e-09 63.9 90 41.1
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.8e-09 63.9 89 42.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.8e-09 63.9 94 42.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.8e-09 63.9 89 42.7
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.8e-09 63.9 95 43.2
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 6.8e-09 63.9 80 45.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 6.8e-09 63.9 89 41.6
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 6.8e-09 63.9 102 42.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 8.9e-09 63.5 88 42.0
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-08 63.2 90 40.0
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.0e-08 62.4 84 39.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.0e-08 62.4 95 42.1
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-08 62.4 90 44.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-08 62.4 90 44.4
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.6e-08 62.0 89 38.2
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.6e-08 62.0 95 42.1
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 3.4e-08 61.6 94 40.4
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.4e-08 61.6 86 43.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.4e-08 61.6 86 40.7
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.4e-08 61.6 89 39.3
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-08 61.2 98 43.9
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-08 61.2 98 43.9
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 4.4e-08 61.2 65 47.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.4e-08 61.2 88 40.9
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.4e-08 61.2 88 40.9
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.4e-08 61.2 96 39.6
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 4.4e-08 61.2 63 49.2
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.7e-08 60.8 96 36.5
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.7e-08 60.8 90 45.6
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.7e-08 60.8 65 44.6
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.7e-08 60.8 99 43.4
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.7e-08 60.8 94 41.5
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 7.5e-08 60.5 46 56.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 7.5e-08 60.5 84 38.1
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 7.5e-08 60.5 83 39.8
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 7.5e-08 60.5 96 35.4
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 9.8e-08 60.1 88 40.9
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.8e-08 60.1 63 50.8
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.3e-07 59.7 85 40.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.3e-07 59.7 96 40.6
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.7e-07 59.3 94 38.3
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.7e-07 59.3 91 36.3
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.7e-07 59.3 41 61.0
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.7e-07 59.3 101 39.6
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.7e-07 59.3 43 60.5
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.7e-07 59.3 46 58.7
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.2e-07 58.9 97 39.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.2e-07 58.9 75 45.3
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 2.2e-07 58.9 88 43.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.8e-07 58.5 84 38.1
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.8e-07 58.5 83 38.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-07 58.5 87 36.8
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.8e-07 58.5 57 50.9
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.7e-07 58.2 34 70.6
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.7e-07 58.2 46 54.3
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 3.7e-07 58.2 91 36.3
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.7e-07 58.2 36 72.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 3.7e-07 58.2 97 43.3
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.9e-07 57.8 87 35.6
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.9e-07 57.8 92 40.2
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.3e-07 57.4 91 35.2
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.3e-07 57.0 97 39.2
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.4e-06 56.2 44 59.1
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.4e-06 56.2 33 69.7
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.4e-06 56.2 96 38.5
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.4e-06 56.2 41 58.5
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.4e-06 56.2 41 58.5
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.4e-06 56.2 41 58.5
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.8e-06 55.8 86 40.7
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.8e-06 55.8 41 58.5
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.8e-06 55.8 97 40.2
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 1.8e-06 55.8 54 50.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.4e-06 55.5 95 34.7
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 3.1e-06 55.1 87 37.9
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 5.4e-06 54.3 36 66.7
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 5.4e-06 54.3 51 51.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 5.4e-06 54.3 51 51.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 5.4e-06 54.3 51 51.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 5.4e-06 54.3 51 51.0
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 5.4e-06 54.3 100 37.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.4e-06 54.3 52 48.1
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 7.0e-06 53.9 61 45.9
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 7.0e-06 53.9 94 40.4
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.0e-06 53.9 94 39.4
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 9.2e-06 53.5 87 40.2


User provided reference genes

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