Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 7.4e-39 163.3 78 100.0
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.1e-37 159.5 78 96.2
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 1.4e-37 159.1 78 96.2
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 2.4e-37 158.3 78 94.9
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 2.4e-37 158.3 78 94.9
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 2.4e-37 158.3 78 94.9
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.4e-37 158.3 78 94.9
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 2.4e-37 158.3 78 94.9
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 3.1e-37 157.9 78 94.9
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 4.1e-37 157.5 78 96.2
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 4.1e-37 157.5 78 94.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 4.1e-37 157.5 78 94.9
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.1e-37 157.5 78 94.9
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 4.1e-37 157.5 78 94.9
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.3e-37 157.1 78 93.6
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.3e-37 157.1 78 93.6
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 5.3e-37 157.1 78 93.6
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 5.3e-37 157.1 78 93.6
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 7.0e-37 156.8 78 93.6
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 7.0e-37 156.8 78 93.6
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 7.0e-37 156.8 78 93.6
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 9.1e-37 156.4 78 93.6
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 9.1e-37 156.4 78 93.6
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.1e-37 156.4 78 93.6
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 9.1e-37 156.4 78 92.3
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.2e-36 156.0 78 93.6
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.2e-36 156.0 78 93.6
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.2e-36 156.0 78 93.6
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.2e-36 156.0 78 93.6
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.2e-36 156.0 78 92.3
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.2e-36 156.0 78 93.6
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.2e-36 156.0 78 92.3
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.6e-36 155.6 78 92.3
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.6e-36 155.6 78 93.6
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.0e-36 155.2 78 92.3
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.0e-36 155.2 78 93.6
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 2.6e-36 154.8 77 92.2
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 2.6e-36 154.8 76 93.4
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.6e-36 154.8 78 92.3
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.6e-36 154.8 78 93.6
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 2.6e-36 154.8 78 92.3
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.6e-36 154.8 78 92.3
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 3.5e-36 154.5 78 92.3
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 4.5e-36 154.1 76 94.7
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 4.5e-36 154.1 76 94.7
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 4.5e-36 154.1 78 93.6
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 4.5e-36 154.1 78 91.0
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.5e-36 154.1 78 93.6
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 5.9e-36 153.7 78 92.3
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.9e-36 153.7 78 92.3
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.9e-36 153.7 78 92.3
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.9e-36 153.7 78 92.3
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 5.9e-36 153.7 78 92.3
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 7.7e-36 153.3 78 91.0
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 7.7e-36 153.3 78 89.7
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 7.7e-36 153.3 78 91.0
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 7.7e-36 153.3 78 91.0
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.0e-35 152.9 78 89.7
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.0e-35 152.9 78 89.7
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.0e-35 152.9 78 89.7
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.0e-35 152.9 78 89.7
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.3e-35 152.5 78 91.0
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 1.3e-35 152.5 78 91.0
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.3e-35 152.5 78 91.0
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 1.3e-35 152.5 78 91.0
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 1.3e-35 152.5 78 91.0
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 1.3e-35 152.5 78 91.0
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.3e-35 152.5 78 91.0
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.7e-35 152.1 78 89.7
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 2.2e-35 151.8 78 92.3
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.9e-35 151.4 78 89.7
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 2.9e-35 151.4 78 89.7
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 2.9e-35 151.4 78 89.7
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.9e-35 151.4 78 91.0
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 2.9e-35 151.4 78 88.5
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 2.9e-35 151.4 78 88.5
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 3.8e-35 151.0 78 91.0
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 3.8e-35 151.0 78 89.7
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 5.0e-35 150.6 78 91.0
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 5.0e-35 150.6 78 88.5
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 5.0e-35 150.6 78 92.3
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 5.0e-35 150.6 78 88.5
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.5e-35 150.2 76 90.8
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.5e-35 150.2 76 90.8
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.5e-35 150.2 76 90.8
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 6.5e-35 150.2 78 91.0
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.5e-35 150.2 78 88.5
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.5e-35 150.2 78 88.5
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 8.5e-35 149.8 78 88.5
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 1.1e-34 149.4 78 87.2
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 2.5e-34 148.3 78 89.7
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 5.5e-34 147.1 76 90.8
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 9.4e-34 146.4 78 89.7
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.6e-33 145.6 76 89.5
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.6e-33 145.6 76 89.5
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 2.7e-33 144.8 78 85.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 2.7e-33 144.8 78 85.9
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.7e-33 144.8 78 85.9
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.7e-33 144.8 76 85.5
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 4.7e-33 144.1 76 86.8
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.4e-32 142.5 78 87.2
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.8e-32 142.1 78 85.9
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.3e-32 141.7 75 88.0
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 4.0e-32 141.0 78 84.6
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 4.0e-32 141.0 78 84.6
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 8.8e-32 139.8 78 80.8
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 3.4e-31 137.9 76 86.8
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.7e-31 137.1 110 65.5
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 2.2e-30 135.2 78 76.9
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 4.8e-30 134.0 73 83.6
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.8e-29 132.1 64 92.2
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 2.4e-29 131.7 123 57.7
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 7.0e-29 130.2 78 80.8
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.6e-25 119.0 75 77.3
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.5e-23 112.5 107 56.1
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 4.9e-22 107.5 70 74.3
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 4.9e-22 107.5 70 74.3
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 8.0e-17 90.1 46 89.1
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.2e-15 86.3 44 90.9
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 2.6e-15 85.1 76 61.8
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 4.9e-14 80.9 44 79.5
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 6.3e-14 80.5 44 86.4
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.1e-13 79.7 46 76.1
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 1.4e-13 79.3 46 76.1
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 4.1e-13 77.8 45 82.2
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 9.2e-13 76.6 39 87.2
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.2e-12 76.3 37 91.9
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 2.0e-12 75.5 34 100.0
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 4.6e-12 74.3 34 97.1
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 4.6e-12 74.3 34 97.1
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 4.6e-12 74.3 34 97.1
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 4.6e-12 74.3 34 97.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 4.6e-12 74.3 34 97.1
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 4.6e-12 74.3 34 97.1
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 4.6e-12 74.3 34 97.1
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.3e-11 72.8 34 94.1


User provided reference genes

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