Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 3.4e-299 1031.2 635 100.0
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.7e-149 533.9 633 62.6
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 3.2e-132 476.5 639 45.5
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.6e-129 466.8 533 68.1
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 8.6e-117 425.2 653 54.8
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 8.9e-114 415.2 644 54.2
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 1.1e-111 408.3 653 53.4
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 5.4e-111 406.0 441 51.2
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 9.2e-111 405.2 653 54.2
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 1.6e-110 404.4 653 52.8
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.7e-110 403.7 441 51.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 3.5e-110 403.3 577 60.8
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 2.9e-109 400.2 644 53.0
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 3.8e-109 399.8 607 56.2
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.5e-108 397.1 649 56.4
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 1.0e-106 391.7 546 59.5
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 1.4e-106 391.3 602 57.1
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 3.7e-104 383.3 502 62.7
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 2.4e-103 380.6 572 58.0
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.2e-102 378.3 575 59.7
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.0e-101 375.2 598 56.4
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.0e-101 375.2 598 56.4
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 6.6e-101 372.5 530 59.8
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.5e-100 370.5 539 60.1
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 6.2e-99 365.9 668 53.4
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 2.3e-98 364.0 474 64.1
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 5.2e-98 362.8 572 50.9
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.5e-97 361.3 547 59.0
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 3.4e-97 360.1 529 58.0
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 3.4e-97 360.1 541 59.9
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 5.8e-97 359.4 519 59.7
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 2.2e-96 357.5 534 59.2
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 8.3e-96 355.5 531 60.1
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 1.4e-95 354.8 651 51.6
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 2.4e-95 354.0 642 50.8
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 2.4e-95 354.0 589 56.0
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 5.4e-95 352.8 578 53.6
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 4.6e-94 349.7 572 55.9
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 2.3e-93 347.4 556 57.2
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 5.1e-93 346.3 583 55.2
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 6.6e-93 345.9 529 56.5
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 4.3e-92 343.2 628 48.2
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 2.3e-90 337.4 551 57.4
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 4.0e-90 336.7 442 45.2
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 4.0e-90 336.7 628 51.8
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 6.8e-90 335.9 546 56.6
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 2.6e-89 334.0 583 53.9
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.4e-89 333.2 568 54.4
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 4.4e-89 333.2 467 56.7
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 5.8e-89 332.8 495 59.6
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 2.2e-88 330.9 540 54.1
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 2.9e-88 330.5 472 61.0
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 4.9e-88 329.7 554 54.7
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 6.4e-88 329.3 399 50.6
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 8.3e-88 328.9 471 61.6
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 1.4e-87 328.2 485 62.3
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 2.4e-87 327.4 570 55.3
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 2.1e-86 324.3 577 52.2
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 7.8e-86 322.4 494 59.1
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 6.6e-85 319.3 471 59.9
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.1e-84 318.5 569 54.1
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 3.3e-84 317.0 583 50.8
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 3.3e-84 317.0 575 54.8
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 1.2e-83 315.1 465 60.9
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.6e-83 314.7 489 56.4
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.8e-83 313.9 515 57.7
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.8e-83 313.9 513 57.9
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 4.7e-83 313.2 477 50.3
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 4.4e-81 306.6 564 52.8
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 1.0e-77 295.4 534 49.6
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.1e-76 292.0 513 56.1
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.8e-74 284.6 476 55.5
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 4.0e-74 283.5 467 58.7
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 2.0e-73 281.2 456 39.3
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 9.9e-73 278.9 539 52.1
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.3e-72 278.5 559 49.7
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.9e-72 277.3 382 43.5
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 2.4e-71 274.2 594 46.3
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 2.7e-70 270.8 517 53.8
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 1.7e-69 268.1 514 53.9
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 3.0e-69 267.3 597 48.7
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 5.1e-69 266.5 594 49.3
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 4.3e-68 263.5 494 46.6
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 7.3e-68 262.7 531 50.5
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 1.6e-67 261.5 535 52.1
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 8.1e-67 259.2 534 50.9
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 5.3e-66 256.5 331 44.4
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 1.4e-63 248.4 564 49.1
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 1.9e-63 248.1 537 49.0
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 1.6e-62 245.0 544 50.2
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 2.1e-62 244.6 299 45.5
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 4.6e-62 243.4 399 39.3
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 2.3e-61 241.1 309 43.0
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 2.3e-61 241.1 636 46.4
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 1.5e-60 238.4 425 38.4
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 2.5e-60 237.7 401 38.9
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 6.2e-59 233.0 606 46.7
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 1.4e-58 231.9 556 50.2
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 1.8e-58 231.5 556 50.2
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 2.5e-55 221.1 498 50.4
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 9.3e-55 219.2 541 48.2
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 9.3e-55 219.2 394 39.1
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 3.5e-54 217.2 418 38.5
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 3.5e-54 217.2 418 38.5
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 3.5e-54 217.2 170 60.0
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.1e-53 213.4 538 31.8
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 5.6e-52 209.9 426 33.1
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 7.4e-44 183.0 588 41.5
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-40 171.4 302 38.7
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 1.2e-38 165.6 450 43.6
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 2.1e-38 164.9 162 56.2
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 1.5e-33 148.7 477 43.2
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.1e-29 133.7 366 30.9
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.2e-24 118.2 364 28.3
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 2.5e-23 114.8 297 29.0
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.6e-22 112.1 316 31.3
Oeu022416.1 Olea europaea HOM05D004670 ORTHO05D008020 6.3e-19 100.1 65 73.8
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 1.4e-18 99.0 54 92.6
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 1.2e-17 95.9 115 45.2
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 2.0e-17 95.1 245 32.7
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 2.0e-17 95.1 245 32.7
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 4.5e-17 94.0 197 32.0
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 7.2e-15 86.7 70 65.7
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.2e-14 85.9 62 66.1
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 8.0e-14 83.2 67 56.7
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.4e-13 82.4 159 36.5
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 8.8e-13 79.7 168 33.3
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 2.6e-12 78.2 238 29.8
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 4.4e-12 77.4 61 60.7
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 5.3e-10 70.5 70 58.6
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 7.0e-10 70.1 90 43.3
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 5.0e-08 63.9 90 38.9
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 2.5e-07 61.6 336 22.3
Cpa.g.sc93.21 Carica papaya HOM05D004670 ORTHO05D022223 2.5e-07 61.6 93 40.9
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.7e-06 58.2 73 45.2
CSS0010906 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 6.1e-06 57.0 307 23.1
CSS0049665 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 6.1e-06 57.0 307 23.1


User provided reference genes

Program Settings