Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1579.7 845 100.0
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1158.3 844 74.4
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1154.4 842 73.9
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 0.0e+00 1142.5 856 73.4
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1141.7 845 72.9
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1115.9 845 70.7
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1113.2 846 71.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1108.6 844 71.7
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1105.9 809 73.2
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1104.7 846 71.7
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1102.4 845 71.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1101.3 843 71.1
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1101.3 845 69.9
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1100.5 843 71.1
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1097.4 845 70.4
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1097.4 842 70.7
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1096.3 845 69.5
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1088.9 845 69.6
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1086.2 844 70.7
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1083.9 845 69.6
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1079.7 881 67.8
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1079.7 844 69.5
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1075.1 845 68.8
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 5.8e-312 1074.7 844 69.1
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 5.8e-312 1073.5 844 69.3
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 8.7e-311 1070.1 847 68.0
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 3.1e-308 1061.6 845 68.6
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 5.3e-308 1060.8 846 67.7
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 4.5e-307 1057.7 846 66.9
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.5e-307 1057.7 846 66.9
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 7.7e-307 1057.0 852 67.6
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.5e-306 1053.5 846 67.0
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 1.9e-305 1052.4 857 69.2
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 2.5e-305 1052.0 847 68.5
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 4.2e-305 1051.2 845 66.9
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 3.0e-303 1045.0 841 68.5
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.8e-301 1038.5 853 65.9
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.7e-301 1038.1 849 65.5
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 4.5e-299 1031.2 845 65.7
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.7e-298 1029.2 841 67.9
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 5.5e-297 1024.2 845 66.5
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 9.5e-297 1023.5 811 68.2
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.5e-294 1016.1 845 65.9
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 4.4e-294 1014.6 846 65.0
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.8e-293 1011.9 843 66.2
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 3.7e-293 1011.5 842 65.6
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 4.9e-293 1011.1 846 67.1
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 6.3e-293 1010.7 844 65.6
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.1e-292 1010.0 842 65.8
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 7.0e-292 1007.3 781 69.9
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 2.0e-291 1005.7 841 65.3
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.9e-289 999.2 897 63.3
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 3.3e-289 998.4 845 64.3
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 7.3e-289 997.3 780 69.5
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.1e-288 995.7 866 63.4
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 1.8e-287 992.6 841 64.6
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 2.3e-287 992.3 841 64.3
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 2.3e-287 992.3 848 64.5
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 5.2e-287 991.1 843 64.5
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 8.9e-287 990.3 844 65.4
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 2.9e-285 985.3 845 64.5
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 8.3e-285 983.8 838 64.0
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 1.8e-284 982.6 843 63.7
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 2.4e-284 982.2 843 64.5
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 1.6e-283 979.5 838 63.7
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.6e-283 979.5 844 63.7
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 2.7e-283 978.8 844 63.2
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.0e-282 976.9 843 62.3
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.7e-282 976.1 844 63.4
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 8.6e-282 973.8 843 62.2
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.9e-281 972.6 843 63.6
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.1e-279 966.8 843 61.9
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 5.2e-279 964.5 843 61.7
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.2e-278 963.4 843 62.0
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 2.0e-278 962.6 843 61.7
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 2.6e-278 962.2 843 61.8
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 2.6e-278 962.2 843 62.0
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 6.4e-277 957.6 845 61.9
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 2.8e-272 942.2 859 60.5
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 3.6e-272 941.8 779 67.3
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 8.1e-272 940.6 944 57.5
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.0e-271 938.3 854 61.9
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 8.9e-271 937.2 848 62.4
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 7.5e-270 934.1 886 59.0
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.9e-265 919.5 843 60.6
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 5.6e-265 917.9 844 60.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 4.4e-262 908.3 883 58.2
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 2.2e-253 879.4 847 57.5
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 2.9e-253 879.0 842 59.0
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 7.1e-252 874.4 848 57.1
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.4e-244 850.1 843 57.2
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 4.2e-228 795.4 887 51.3
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.2e-227 793.9 703 62.9
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 5.0e-221 771.9 846 55.1
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 3.1e-215 752.7 692 61.1
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.5e-214 750.4 617 67.1
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 3.7e-168 596.3 648 54.0
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.4e-167 593.6 517 64.8
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 3.3e-164 583.2 809 43.6
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 3.6e-163 579.7 860 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.9e-159 567.4 790 43.9
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 2.6e-153 547.0 568 54.8
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.5e-150 536.6 324 84.9
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 7.8e-142 508.8 406 67.7
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 8.7e-141 505.4 385 68.3
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 3.3e-140 503.4 883 38.3
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 1.8e-138 497.7 857 37.9
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.7e-134 483.8 806 38.1
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.5e-119 433.0 271 81.2
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.0e-101 374.0 524 48.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.7e-99 368.2 255 73.3
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 8.8e-93 345.9 275 61.5
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 4.7e-86 323.6 311 55.3
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.8e-80 303.9 243 69.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 7.0e-50 203.4 831 25.0
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.3e-48 199.1 374 38.8
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 9.5e-47 193.0 163 64.4
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 3.5e-41 174.5 221 47.5
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.5e-39 168.3 853 23.4
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 2.8e-38 164.9 119 69.7
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.6e-38 164.5 134 67.9
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-34 152.1 193 46.6
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.7e-32 145.6 93 77.4
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.5e-28 132.5 101 67.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 2.7e-25 121.7 111 60.4
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.7e-24 119.0 124 53.2
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.0e-24 118.2 69 89.9
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 2.4e-21 108.6 70 71.4
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 2.4e-21 108.6 70 71.4
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 5.3e-21 107.5 69 76.8
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.8e-14 85.1 61 75.4
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-13 82.8 86 51.2
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 7.6e-12 77.0 165 37.6
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 7.6e-12 77.0 69 59.4
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.0e-08 65.1 47 68.1
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 3.3e-07 61.6 123 34.1
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 5.6e-07 60.8 67 49.3


User provided reference genes

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